Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
USHBP1Q8N6Y0 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
USHBP1Q8N6Y0 SF1-220ENST00000626028 704 ntTSL 2 BASIC30.49■■■□□ 2.47
USHBP1Q8N6Y0 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
USHBP1Q8N6Y0 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC30.49■■■□□ 2.47
USHBP1Q8N6Y0 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
USHBP1Q8N6Y0 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
USHBP1Q8N6Y0 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC30.48■■■□□ 2.47
USHBP1Q8N6Y0 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
USHBP1Q8N6Y0 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
USHBP1Q8N6Y0 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC30.47■■■□□ 2.47
USHBP1Q8N6Y0 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC30.47■■■□□ 2.47
USHBP1Q8N6Y0 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
USHBP1Q8N6Y0 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC30.46■■■□□ 2.47
USHBP1Q8N6Y0 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
USHBP1Q8N6Y0 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC30.46■■■□□ 2.47
USHBP1Q8N6Y0 AL022069.1-201ENST00000568025 1636 ntBASIC30.46■■■□□ 2.47
USHBP1Q8N6Y0 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
USHBP1Q8N6Y0 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
USHBP1Q8N6Y0 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.47
USHBP1Q8N6Y0 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC30.45■■■□□ 2.47
USHBP1Q8N6Y0 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
USHBP1Q8N6Y0 AC006455.2-201ENST00000429931 906 ntBASIC30.45■■■□□ 2.47
USHBP1Q8N6Y0 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC30.45■■■□□ 2.47
USHBP1Q8N6Y0 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC30.45■■■□□ 2.47
USHBP1Q8N6Y0 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
USHBP1Q8N6Y0 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC30.45■■■□□ 2.46
USHBP1Q8N6Y0 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC30.45■■■□□ 2.46
USHBP1Q8N6Y0 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC30.45■■■□□ 2.46
USHBP1Q8N6Y0 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC30.45■■■□□ 2.46
USHBP1Q8N6Y0 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC30.44■■■□□ 2.46
USHBP1Q8N6Y0 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
USHBP1Q8N6Y0 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
USHBP1Q8N6Y0 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
USHBP1Q8N6Y0 RBM38-205ENST00000440234 686 ntTSL 2 BASIC30.44■■■□□ 2.46
USHBP1Q8N6Y0 AC091305.1-201ENST00000479476 895 ntBASIC30.44■■■□□ 2.46
USHBP1Q8N6Y0 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC30.44■■■□□ 2.46
USHBP1Q8N6Y0 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.46
USHBP1Q8N6Y0 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC30.44■■■□□ 2.46
USHBP1Q8N6Y0 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
USHBP1Q8N6Y0 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
USHBP1Q8N6Y0 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC30.43■■■□□ 2.46
USHBP1Q8N6Y0 CA15P2-201ENST00000611168 834 ntBASIC30.43■■■□□ 2.46
USHBP1Q8N6Y0 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC30.43■■■□□ 2.46
USHBP1Q8N6Y0 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
USHBP1Q8N6Y0 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
USHBP1Q8N6Y0 AC145676.1-201ENST00000514988 2004 ntBASIC30.42■■■□□ 2.46
USHBP1Q8N6Y0 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC30.42■■■□□ 2.46
USHBP1Q8N6Y0 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
USHBP1Q8N6Y0 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
USHBP1Q8N6Y0 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
USHBP1Q8N6Y0 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
USHBP1Q8N6Y0 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
USHBP1Q8N6Y0 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC30.42■■■□□ 2.46
USHBP1Q8N6Y0 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC30.42■■■□□ 2.46
USHBP1Q8N6Y0 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
USHBP1Q8N6Y0 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
USHBP1Q8N6Y0 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
USHBP1Q8N6Y0 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
USHBP1Q8N6Y0 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
USHBP1Q8N6Y0 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC30.41■■■□□ 2.46
USHBP1Q8N6Y0 C17orf82-201ENST00000623772 1530 ntBASIC30.41■■■□□ 2.46
USHBP1Q8N6Y0 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC30.41■■■□□ 2.46
USHBP1Q8N6Y0 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC30.41■■■□□ 2.46
USHBP1Q8N6Y0 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC30.4■■■□□ 2.46
USHBP1Q8N6Y0 AC008764.7-201ENST00000593779 1081 ntBASIC30.4■■■□□ 2.46
USHBP1Q8N6Y0 AC092171.4-201ENST00000609130 632 ntBASIC30.4■■■□□ 2.46
USHBP1Q8N6Y0 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
USHBP1Q8N6Y0 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
USHBP1Q8N6Y0 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC30.38■■■□□ 2.45
USHBP1Q8N6Y0 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC30.38■■■□□ 2.45
USHBP1Q8N6Y0 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC30.38■■■□□ 2.45
USHBP1Q8N6Y0 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
USHBP1Q8N6Y0 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
USHBP1Q8N6Y0 MIR5787-201ENST00000611784 55 ntBASIC30.38■■■□□ 2.45
USHBP1Q8N6Y0 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC30.38■■■□□ 2.45
USHBP1Q8N6Y0 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
USHBP1Q8N6Y0 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC30.38■■■□□ 2.45
USHBP1Q8N6Y0 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
USHBP1Q8N6Y0 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
USHBP1Q8N6Y0 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC30.37■■■□□ 2.45
USHBP1Q8N6Y0 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC30.37■■■□□ 2.45
USHBP1Q8N6Y0 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC30.37■■■□□ 2.45
USHBP1Q8N6Y0 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC30.37■■■□□ 2.45
USHBP1Q8N6Y0 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
USHBP1Q8N6Y0 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC30.36■■■□□ 2.45
USHBP1Q8N6Y0 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
USHBP1Q8N6Y0 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC30.36■■■□□ 2.45
USHBP1Q8N6Y0 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC30.36■■■□□ 2.45
USHBP1Q8N6Y0 RASA4CP-201ENST00000424092 1398 ntBASIC30.36■■■□□ 2.45
USHBP1Q8N6Y0 HLA-L-211ENST00000482052 1765 ntBASIC30.36■■■□□ 2.45
USHBP1Q8N6Y0 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
USHBP1Q8N6Y0 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC30.35■■■□□ 2.45
USHBP1Q8N6Y0 AC011298.3-201ENST00000615796 283 ntBASIC30.35■■■□□ 2.45
USHBP1Q8N6Y0 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
USHBP1Q8N6Y0 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
USHBP1Q8N6Y0 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
USHBP1Q8N6Y0 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC30.35■■■□□ 2.45
USHBP1Q8N6Y0 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
USHBP1Q8N6Y0 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC30.35■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms