Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CSMD3Q7Z407 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC16.15■□□□□ 0.18
CSMD3Q7Z407 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CSMD3Q7Z407 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC16.15■□□□□ 0.18
CSMD3Q7Z407 AC131274.2-201ENST00000580697 1507 ntBASIC16.15■□□□□ 0.18
CSMD3Q7Z407 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CSMD3Q7Z407 AK1-201ENST00000223836 736 ntTSL 3 BASIC16.15■□□□□ 0.18
CSMD3Q7Z407 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC16.15■□□□□ 0.18
CSMD3Q7Z407 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CSMD3Q7Z407 ME3-201ENST00000323418 1068 ntTSL 5 BASIC16.14■□□□□ 0.17
CSMD3Q7Z407 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC16.14■□□□□ 0.17
CSMD3Q7Z407 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC16.14■□□□□ 0.17
CSMD3Q7Z407 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CSMD3Q7Z407 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CSMD3Q7Z407 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CSMD3Q7Z407 TERF1P2-201ENST00000583350 1212 ntBASIC16.14■□□□□ 0.17
CSMD3Q7Z407 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CSMD3Q7Z407 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CSMD3Q7Z407 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CSMD3Q7Z407 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CSMD3Q7Z407 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC16.13■□□□□ 0.17
CSMD3Q7Z407 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CSMD3Q7Z407 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CSMD3Q7Z407 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CSMD3Q7Z407 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC16.13■□□□□ 0.17
CSMD3Q7Z407 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CSMD3Q7Z407 SNX3-202ENST00000349379 890 ntTSL 2 BASIC16.13■□□□□ 0.17
CSMD3Q7Z407 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC16.13■□□□□ 0.17
CSMD3Q7Z407 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC16.13■□□□□ 0.17
CSMD3Q7Z407 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC16.13■□□□□ 0.17
CSMD3Q7Z407 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CSMD3Q7Z407 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CSMD3Q7Z407 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CSMD3Q7Z407 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC16.13■□□□□ 0.17
CSMD3Q7Z407 AC099791.2-201ENST00000605725 427 ntBASIC16.12■□□□□ 0.17
CSMD3Q7Z407 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC16.12■□□□□ 0.17
CSMD3Q7Z407 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC16.12■□□□□ 0.17
CSMD3Q7Z407 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC16.12■□□□□ 0.17
CSMD3Q7Z407 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC16.12■□□□□ 0.17
CSMD3Q7Z407 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC16.12■□□□□ 0.17
CSMD3Q7Z407 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CSMD3Q7Z407 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CSMD3Q7Z407 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC16.12■□□□□ 0.17
CSMD3Q7Z407 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC16.12■□□□□ 0.17
CSMD3Q7Z407 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CSMD3Q7Z407 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CSMD3Q7Z407 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CSMD3Q7Z407 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CSMD3Q7Z407 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSMD3Q7Z407 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC16.11■□□□□ 0.17
CSMD3Q7Z407 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSMD3Q7Z407 ABHD17AP1-201ENST00000358206 933 ntBASIC16.11■□□□□ 0.17
CSMD3Q7Z407 EMC9-206ENST00000560403 872 ntTSL 2 BASIC16.11■□□□□ 0.17
CSMD3Q7Z407 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSMD3Q7Z407 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CSMD3Q7Z407 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC16.11■□□□□ 0.17
CSMD3Q7Z407 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC16.11■□□□□ 0.17
CSMD3Q7Z407 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CSMD3Q7Z407 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC16.11■□□□□ 0.17
CSMD3Q7Z407 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC16.11■□□□□ 0.17
CSMD3Q7Z407 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSMD3Q7Z407 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CSMD3Q7Z407 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSMD3Q7Z407 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CSMD3Q7Z407 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CSMD3Q7Z407 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC16.1■□□□□ 0.17
CSMD3Q7Z407 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC16.1■□□□□ 0.17
CSMD3Q7Z407 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CSMD3Q7Z407 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CSMD3Q7Z407 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CSMD3Q7Z407 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CSMD3Q7Z407 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CSMD3Q7Z407 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CSMD3Q7Z407 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC16.1■□□□□ 0.17
CSMD3Q7Z407 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
CSMD3Q7Z407 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC16.1■□□□□ 0.17
CSMD3Q7Z407 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CSMD3Q7Z407 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC16.09■□□□□ 0.17
CSMD3Q7Z407 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CSMD3Q7Z407 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CSMD3Q7Z407 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC16.09■□□□□ 0.17
CSMD3Q7Z407 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CSMD3Q7Z407 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CSMD3Q7Z407 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CSMD3Q7Z407 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC16.09■□□□□ 0.17
CSMD3Q7Z407 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CSMD3Q7Z407 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CSMD3Q7Z407 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
CSMD3Q7Z407 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
CSMD3Q7Z407 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CSMD3Q7Z407 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CSMD3Q7Z407 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
CSMD3Q7Z407 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CSMD3Q7Z407 AL358852.1-201ENST00000623174 1268 ntBASIC16.08■□□□□ 0.16
CSMD3Q7Z407 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CSMD3Q7Z407 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CSMD3Q7Z407 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC16.08■□□□□ 0.16
CSMD3Q7Z407 AC097639.1-201ENST00000565519 1891 ntBASIC16.08■□□□□ 0.16
CSMD3Q7Z407 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CSMD3Q7Z407 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms