Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CSPG4Q6UVK1 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CSPG4Q6UVK1 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CSPG4Q6UVK1 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC18.99■□□□□ 0.63
CSPG4Q6UVK1 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.99■□□□□ 0.63
CSPG4Q6UVK1 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.99■□□□□ 0.63
CSPG4Q6UVK1 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CSPG4Q6UVK1 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CSPG4Q6UVK1 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CSPG4Q6UVK1 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
CSPG4Q6UVK1 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
CSPG4Q6UVK1 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC18.98■□□□□ 0.63
CSPG4Q6UVK1 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CSPG4Q6UVK1 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CSPG4Q6UVK1 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC18.98■□□□□ 0.63
CSPG4Q6UVK1 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CSPG4Q6UVK1 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CSPG4Q6UVK1 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CSPG4Q6UVK1 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.98■□□□□ 0.63
CSPG4Q6UVK1 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CSPG4Q6UVK1 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
CSPG4Q6UVK1 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC18.98■□□□□ 0.63
CSPG4Q6UVK1 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CSPG4Q6UVK1 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CSPG4Q6UVK1 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 ABHD17AP1-201ENST00000358206 933 ntBASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 YBX1P1-201ENST00000445822 960 ntBASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 AL137784.2-201ENST00000607332 1000 ntBASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CSPG4Q6UVK1 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CSPG4Q6UVK1 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CSPG4Q6UVK1 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.96■□□□□ 0.63
CSPG4Q6UVK1 AC006455.2-201ENST00000429931 906 ntBASIC18.96■□□□□ 0.63
CSPG4Q6UVK1 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CSPG4Q6UVK1 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CSPG4Q6UVK1 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CSPG4Q6UVK1 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CSPG4Q6UVK1 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.96■□□□□ 0.63
CSPG4Q6UVK1 BX842568.3-201ENST00000418104 571 ntBASIC18.96■□□□□ 0.63
CSPG4Q6UVK1 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CSPG4Q6UVK1 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.95■□□□□ 0.62
CSPG4Q6UVK1 AC092171.4-201ENST00000609130 632 ntBASIC18.95■□□□□ 0.62
CSPG4Q6UVK1 AC066615.1-201ENST00000640911 628 ntBASIC18.95■□□□□ 0.62
CSPG4Q6UVK1 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CSPG4Q6UVK1 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC18.95■□□□□ 0.62
CSPG4Q6UVK1 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CSPG4Q6UVK1 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CSPG4Q6UVK1 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.95■□□□□ 0.62
CSPG4Q6UVK1 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CSPG4Q6UVK1 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 MPST-208ENST00000628507 698 ntTSL 5 BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CSPG4Q6UVK1 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CSPG4Q6UVK1 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CSPG4Q6UVK1 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC18.93■□□□□ 0.62
CSPG4Q6UVK1 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CSPG4Q6UVK1 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CSPG4Q6UVK1 KRT18P5-201ENST00000436075 1291 ntBASIC18.93■□□□□ 0.62
CSPG4Q6UVK1 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.93■□□□□ 0.62
CSPG4Q6UVK1 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.93■□□□□ 0.62
CSPG4Q6UVK1 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.93■□□□□ 0.62
CSPG4Q6UVK1 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CSPG4Q6UVK1 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.92■□□□□ 0.62
CSPG4Q6UVK1 AC136469.2-201ENST00000623944 1028 ntBASIC18.92■□□□□ 0.62
CSPG4Q6UVK1 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CSPG4Q6UVK1 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC18.92■□□□□ 0.62
CSPG4Q6UVK1 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CSPG4Q6UVK1 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CSPG4Q6UVK1 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CSPG4Q6UVK1 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CSPG4Q6UVK1 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CSPG4Q6UVK1 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CSPG4Q6UVK1 AC123595.1-201ENST00000440769 1046 ntBASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms