Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
SCN1AP35498 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC24.6■■□□□ 1.53
SCN1AP35498 EI24-204ENST00000527235 1625 ntTSL 5 BASIC24.6■■□□□ 1.53
SCN1AP35498 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC24.6■■□□□ 1.53
SCN1AP35498 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
SCN1AP35498 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SCN1AP35498 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC24.59■■□□□ 1.53
SCN1AP35498 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
SCN1AP35498 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
SCN1AP35498 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC24.59■■□□□ 1.53
SCN1AP35498 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
SCN1AP35498 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC24.58■■□□□ 1.53
SCN1AP35498 AC005703.6-201ENST00000623265 1329 ntBASIC24.58■■□□□ 1.53
SCN1AP35498 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
SCN1AP35498 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC24.58■■□□□ 1.53
SCN1AP35498 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC24.58■■□□□ 1.52
SCN1AP35498 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
SCN1AP35498 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SCN1AP35498 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC24.57■■□□□ 1.52
SCN1AP35498 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SCN1AP35498 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC24.57■■□□□ 1.52
SCN1AP35498 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC24.57■■□□□ 1.52
SCN1AP35498 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
SCN1AP35498 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
SCN1AP35498 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SCN1AP35498 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SCN1AP35498 PREB-202ENST00000406567 1910 ntTSL 5 BASIC24.56■■□□□ 1.52
SCN1AP35498 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
SCN1AP35498 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SCN1AP35498 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
SCN1AP35498 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC24.56■■□□□ 1.52
SCN1AP35498 LINC00543-201ENST00000567234 1845 ntBASIC24.56■■□□□ 1.52
SCN1AP35498 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SCN1AP35498 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SCN1AP35498 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
SCN1AP35498 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SCN1AP35498 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SCN1AP35498 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC24.55■■□□□ 1.52
SCN1AP35498 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SCN1AP35498 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
SCN1AP35498 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC24.55■■□□□ 1.52
SCN1AP35498 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
SCN1AP35498 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
SCN1AP35498 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
SCN1AP35498 MTURN-203ENST00000409688 843 ntTSL 2 BASIC24.54■■□□□ 1.52
SCN1AP35498 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC24.54■■□□□ 1.52
SCN1AP35498 USF2-207ENST00000595068 1612 ntTSL 5 BASIC24.54■■□□□ 1.52
SCN1AP35498 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
SCN1AP35498 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SCN1AP35498 REST-206ENST00000612429 1376 ntTSL 5 BASIC24.54■■□□□ 1.52
SCN1AP35498 REST-207ENST00000616975 1370 ntTSL 5 BASIC24.54■■□□□ 1.52
SCN1AP35498 LINC01124-201ENST00000409786 2117 ntBASIC24.54■■□□□ 1.52
SCN1AP35498 RPP21-222ENST00000433076 577 ntTSL 2 BASIC24.54■■□□□ 1.52
SCN1AP35498 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SCN1AP35498 AC008406.3-201ENST00000620001 1374 ntBASIC24.53■■□□□ 1.52
SCN1AP35498 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC24.52■■□□□ 1.52
SCN1AP35498 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
SCN1AP35498 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC24.52■■□□□ 1.52
SCN1AP35498 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SCN1AP35498 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
SCN1AP35498 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC24.52■■□□□ 1.52
SCN1AP35498 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
SCN1AP35498 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
SCN1AP35498 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
SCN1AP35498 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
SCN1AP35498 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
SCN1AP35498 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC24.51■■□□□ 1.51
SCN1AP35498 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
SCN1AP35498 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SCN1AP35498 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
SCN1AP35498 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
SCN1AP35498 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
SCN1AP35498 AL139125.2-201ENST00000623134 1869 ntBASIC24.5■■□□□ 1.51
SCN1AP35498 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
SCN1AP35498 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
SCN1AP35498 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
SCN1AP35498 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
SCN1AP35498 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC24.5■■□□□ 1.51
SCN1AP35498 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SCN1AP35498 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC24.5■■□□□ 1.51
SCN1AP35498 AL136116.3-201ENST00000402907 1138 ntBASIC24.5■■□□□ 1.51
SCN1AP35498 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SCN1AP35498 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
SCN1AP35498 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SCN1AP35498 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
SCN1AP35498 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
SCN1AP35498 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC24.49■■□□□ 1.51
SCN1AP35498 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
SCN1AP35498 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC24.49■■□□□ 1.51
SCN1AP35498 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC24.49■■□□□ 1.51
SCN1AP35498 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SCN1AP35498 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
SCN1AP35498 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
SCN1AP35498 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC24.48■■□□□ 1.51
SCN1AP35498 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SCN1AP35498 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
SCN1AP35498 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC24.48■■□□□ 1.51
SCN1AP35498 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC24.48■■□□□ 1.51
SCN1AP35498 EI24-213ENST00000618552 1747 ntTSL 5 BASIC24.48■■□□□ 1.51
SCN1AP35498 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms