Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RORAP35398 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RORAP35398 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RORAP35398 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.75■■□□□ 1.07
RORAP35398 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.75■■□□□ 1.07
RORAP35398 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.75■■□□□ 1.07
RORAP35398 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RORAP35398 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RORAP35398 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RORAP35398 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RORAP35398 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.74■■□□□ 1.07
RORAP35398 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RORAP35398 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.74■■□□□ 1.07
RORAP35398 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.74■■□□□ 1.07
RORAP35398 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RORAP35398 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.74■■□□□ 1.07
RORAP35398 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.74■■□□□ 1.07
RORAP35398 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RORAP35398 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RORAP35398 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.73■■□□□ 1.07
RORAP35398 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RORAP35398 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RORAP35398 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.73■■□□□ 1.07
RORAP35398 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RORAP35398 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
RORAP35398 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
RORAP35398 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RORAP35398 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RORAP35398 AL022069.1-201ENST00000568025 1636 ntBASIC21.73■■□□□ 1.07
RORAP35398 AP003733.4-201ENST00000623785 1697 ntBASIC21.72■■□□□ 1.07
RORAP35398 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.72■■□□□ 1.07
RORAP35398 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RORAP35398 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.72■■□□□ 1.07
RORAP35398 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RORAP35398 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
RORAP35398 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RORAP35398 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
RORAP35398 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.71■■□□□ 1.07
RORAP35398 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RORAP35398 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RORAP35398 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
RORAP35398 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RORAP35398 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.7■■□□□ 1.06
RORAP35398 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.7■■□□□ 1.06
RORAP35398 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RORAP35398 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.7■■□□□ 1.06
RORAP35398 AC133561.4-201ENST00000566112 224 ntBASIC21.7■■□□□ 1.06
RORAP35398 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RORAP35398 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RORAP35398 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.7■■□□□ 1.06
RORAP35398 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RORAP35398 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.69■■□□□ 1.06
RORAP35398 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.69■■□□□ 1.06
RORAP35398 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.69■■□□□ 1.06
RORAP35398 SRD5A1P1-201ENST00000442297 786 ntBASIC21.69■■□□□ 1.06
RORAP35398 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.69■■□□□ 1.06
RORAP35398 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RORAP35398 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.69■■□□□ 1.06
RORAP35398 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RORAP35398 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RORAP35398 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
RORAP35398 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
RORAP35398 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
RORAP35398 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
RORAP35398 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.68■■□□□ 1.06
RORAP35398 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RORAP35398 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RORAP35398 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
RORAP35398 AC138932.3-201ENST00000567634 1902 ntBASIC21.68■■□□□ 1.06
RORAP35398 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.67■■□□□ 1.06
RORAP35398 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RORAP35398 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.67■■□□□ 1.06
RORAP35398 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RORAP35398 AC005837.3-201ENST00000612163 286 ntBASIC21.67■■□□□ 1.06
RORAP35398 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RORAP35398 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RORAP35398 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.66■■□□□ 1.06
RORAP35398 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RORAP35398 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RORAP35398 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RORAP35398 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RORAP35398 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RORAP35398 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RORAP35398 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RORAP35398 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.65■■□□□ 1.06
RORAP35398 AL161729.1-201ENST00000604104 1402 ntBASIC21.65■■□□□ 1.06
RORAP35398 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RORAP35398 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.65■■□□□ 1.06
RORAP35398 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.65■■□□□ 1.06
RORAP35398 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RORAP35398 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RORAP35398 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RORAP35398 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.65■■□□□ 1.06
RORAP35398 AC106739.1-201ENST00000617035 715 ntBASIC21.65■■□□□ 1.06
RORAP35398 HLA-L-211ENST00000482052 1765 ntBASIC21.65■■□□□ 1.06
RORAP35398 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
RORAP35398 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RORAP35398 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.65■■□□□ 1.06
RORAP35398 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
RORAP35398 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms