Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.92
SHMT1P34896 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC27.01■■□□□ 1.92
SHMT1P34896 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHMT1P34896 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
SHMT1P34896 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHMT1P34896 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC27.01■■□□□ 1.91
SHMT1P34896 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHMT1P34896 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHMT1P34896 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
SHMT1P34896 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHMT1P34896 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
SHMT1P34896 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHMT1P34896 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC26.99■■□□□ 1.91
SHMT1P34896 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
SHMT1P34896 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC26.99■■□□□ 1.91
SHMT1P34896 AL031432.3-201ENST00000607698 485 ntBASIC26.99■■□□□ 1.91
SHMT1P34896 AL136162.1-201ENST00000607711 1078 ntBASIC26.99■■□□□ 1.91
SHMT1P34896 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC26.99■■□□□ 1.91
SHMT1P34896 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC26.98■■□□□ 1.91
SHMT1P34896 AC009102.2-201ENST00000606772 1639 ntBASIC26.98■■□□□ 1.91
SHMT1P34896 MIR935-201ENST00000401179 91 ntBASIC26.98■■□□□ 1.91
SHMT1P34896 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC26.98■■□□□ 1.91
SHMT1P34896 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHMT1P34896 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHMT1P34896 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC26.98■■□□□ 1.91
SHMT1P34896 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
SHMT1P34896 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC26.97■■□□□ 1.91
SHMT1P34896 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHMT1P34896 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC26.97■■□□□ 1.91
SHMT1P34896 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHMT1P34896 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHMT1P34896 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC26.97■■□□□ 1.91
SHMT1P34896 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHMT1P34896 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SHMT1P34896 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SHMT1P34896 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC26.96■■□□□ 1.91
SHMT1P34896 AC024257.2-201ENST00000549699 147 ntBASIC26.96■■□□□ 1.91
SHMT1P34896 AL161729.1-201ENST00000604104 1402 ntBASIC26.96■■□□□ 1.91
SHMT1P34896 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC26.96■■□□□ 1.91
SHMT1P34896 AC135279.3-201ENST00000610945 1311 ntBASIC26.95■■□□□ 1.91
SHMT1P34896 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.91
SHMT1P34896 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.91
SHMT1P34896 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.91
SHMT1P34896 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
SHMT1P34896 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
SHMT1P34896 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC26.95■■□□□ 1.9
SHMT1P34896 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC26.95■■□□□ 1.9
SHMT1P34896 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC26.95■■□□□ 1.9
SHMT1P34896 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC26.95■■□□□ 1.9
SHMT1P34896 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
SHMT1P34896 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
SHMT1P34896 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.9
SHMT1P34896 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC26.94■■□□□ 1.9
SHMT1P34896 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHMT1P34896 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHMT1P34896 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHMT1P34896 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC26.94■■□□□ 1.9
SHMT1P34896 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHMT1P34896 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC26.94■■□□□ 1.9
SHMT1P34896 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHMT1P34896 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC26.94■■□□□ 1.9
SHMT1P34896 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC26.94■■□□□ 1.9
SHMT1P34896 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC26.94■■□□□ 1.9
SHMT1P34896 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC26.94■■□□□ 1.9
SHMT1P34896 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHMT1P34896 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
SHMT1P34896 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC26.94■■□□□ 1.9
SHMT1P34896 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHMT1P34896 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHMT1P34896 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHMT1P34896 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
SHMT1P34896 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
SHMT1P34896 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHMT1P34896 AP003733.4-201ENST00000623785 1697 ntBASIC26.93■■□□□ 1.9
SHMT1P34896 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHMT1P34896 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHMT1P34896 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC26.93■■□□□ 1.9
SHMT1P34896 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC26.93■■□□□ 1.9
SHMT1P34896 AC135731.1-201ENST00000569415 2548 ntBASIC26.93■■□□□ 1.9
SHMT1P34896 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC26.93■■□□□ 1.9
SHMT1P34896 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
SHMT1P34896 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHMT1P34896 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SHMT1P34896 SUDS3P1-201ENST00000505831 966 ntBASIC26.92■■□□□ 1.9
SHMT1P34896 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC26.92■■□□□ 1.9
SHMT1P34896 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
SHMT1P34896 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SHMT1P34896 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
SHMT1P34896 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SHMT1P34896 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
SHMT1P34896 C17orf82-201ENST00000623772 1530 ntBASIC26.9■■□□□ 1.9
SHMT1P34896 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
SHMT1P34896 AC138932.3-201ENST00000567634 1902 ntBASIC26.9■■□□□ 1.9
SHMT1P34896 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
SHMT1P34896 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC26.9■■□□□ 1.9
SHMT1P34896 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
SHMT1P34896 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
SHMT1P34896 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC26.9■■□□□ 1.9
SHMT1P34896 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
SHMT1P34896 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms