Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
COL8A1P27658 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.09■□□□□ 0.81
COL8A1P27658 NTF6G-201ENST00000591094 616 ntBASIC20.09■□□□□ 0.81
COL8A1P27658 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.09■□□□□ 0.81
COL8A1P27658 MIR6084-201ENST00000622012 110 ntBASIC20.09■□□□□ 0.81
COL8A1P27658 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL8A1P27658 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL8A1P27658 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL8A1P27658 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL8A1P27658 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL8A1P27658 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.08■□□□□ 0.81
COL8A1P27658 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL8A1P27658 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL8A1P27658 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL8A1P27658 AC126544.1-201ENST00000580842 1059 ntBASIC20.08■□□□□ 0.81
COL8A1P27658 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.08■□□□□ 0.81
COL8A1P27658 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL8A1P27658 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.07■□□□□ 0.8
COL8A1P27658 AC006455.2-201ENST00000429931 906 ntBASIC20.07■□□□□ 0.8
COL8A1P27658 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL8A1P27658 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.07■□□□□ 0.8
COL8A1P27658 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
COL8A1P27658 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL8A1P27658 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC20.07■□□□□ 0.8
COL8A1P27658 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.07■□□□□ 0.8
COL8A1P27658 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.07■□□□□ 0.8
COL8A1P27658 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL8A1P27658 TSPY26P-201ENST00000476365 1326 ntBASIC20.06■□□□□ 0.8
COL8A1P27658 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL8A1P27658 LINC01003-201ENST00000564834 1764 ntBASIC20.06■□□□□ 0.8
COL8A1P27658 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL8A1P27658 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.06■□□□□ 0.8
COL8A1P27658 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL8A1P27658 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL8A1P27658 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.06■□□□□ 0.8
COL8A1P27658 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC20.06■□□□□ 0.8
COL8A1P27658 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
COL8A1P27658 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.06■□□□□ 0.8
COL8A1P27658 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL8A1P27658 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL8A1P27658 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL8A1P27658 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL8A1P27658 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL8A1P27658 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL8A1P27658 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL8A1P27658 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL8A1P27658 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL8A1P27658 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
COL8A1P27658 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.05■□□□□ 0.8
COL8A1P27658 CCDC92B-201ENST00000575506 885 ntBASIC20.05■□□□□ 0.8
COL8A1P27658 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.05■□□□□ 0.8
COL8A1P27658 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.05■□□□□ 0.8
COL8A1P27658 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.05■□□□□ 0.8
COL8A1P27658 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC20.05■□□□□ 0.8
COL8A1P27658 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL8A1P27658 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL8A1P27658 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL8A1P27658 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.04■□□□□ 0.8
COL8A1P27658 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL8A1P27658 TMEM191A-211ENST00000637163 1067 ntBASIC20.04■□□□□ 0.8
COL8A1P27658 AC009102.2-201ENST00000606772 1639 ntBASIC20.04■□□□□ 0.8
COL8A1P27658 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL8A1P27658 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL8A1P27658 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL8A1P27658 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL8A1P27658 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.03■□□□□ 0.8
COL8A1P27658 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.03■□□□□ 0.8
COL8A1P27658 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
COL8A1P27658 AC066615.1-201ENST00000640911 628 ntBASIC20.03■□□□□ 0.8
COL8A1P27658 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
COL8A1P27658 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.03■□□□□ 0.8
COL8A1P27658 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL8A1P27658 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.02■□□□□ 0.8
COL8A1P27658 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.02■□□□□ 0.8
COL8A1P27658 AC123595.1-201ENST00000440769 1046 ntBASIC20.02■□□□□ 0.8
COL8A1P27658 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.02■□□□□ 0.8
COL8A1P27658 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL8A1P27658 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL8A1P27658 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL8A1P27658 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL8A1P27658 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL8A1P27658 AC142086.6-201ENST00000621154 1765 ntBASIC20.01■□□□□ 0.79
COL8A1P27658 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL8A1P27658 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL8A1P27658 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL8A1P27658 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.01■□□□□ 0.79
COL8A1P27658 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.01■□□□□ 0.79
COL8A1P27658 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.01■□□□□ 0.79
COL8A1P27658 AC080038.1-201ENST00000611274 1154 ntBASIC20.01■□□□□ 0.79
COL8A1P27658 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL8A1P27658 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
COL8A1P27658 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL8A1P27658 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL8A1P27658 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL8A1P27658 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
COL8A1P27658 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL8A1P27658 AC027612.3-201ENST00000413684 1047 ntBASIC20■□□□□ 0.79
COL8A1P27658 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL8A1P27658 MIR3181-201ENST00000578512 73 ntBASIC20■□□□□ 0.79
COL8A1P27658 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms