Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
NPHP1O15259 GLI3-203ENST00000437480 451 ntTSL 2 BASIC28.86■■■□□ 2.21
NPHP1O15259 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
NPHP1O15259 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC28.86■■■□□ 2.21
NPHP1O15259 AC011298.3-201ENST00000615796 283 ntBASIC28.86■■■□□ 2.21
NPHP1O15259 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC28.86■■■□□ 2.21
NPHP1O15259 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC28.86■■■□□ 2.21
NPHP1O15259 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC28.86■■■□□ 2.21
NPHP1O15259 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC28.85■■■□□ 2.21
NPHP1O15259 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
NPHP1O15259 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
NPHP1O15259 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
NPHP1O15259 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
NPHP1O15259 AC099791.1-201ENST00000416440 715 ntBASIC28.85■■■□□ 2.21
NPHP1O15259 PLD4-205ENST00000553861 667 ntTSL 2 BASIC28.85■■■□□ 2.21
NPHP1O15259 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC28.85■■■□□ 2.21
NPHP1O15259 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC28.85■■■□□ 2.21
NPHP1O15259 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC28.85■■■□□ 2.21
NPHP1O15259 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC28.85■■■□□ 2.21
NPHP1O15259 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC28.85■■■□□ 2.21
NPHP1O15259 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
NPHP1O15259 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC28.84■■■□□ 2.21
NPHP1O15259 AC009102.2-201ENST00000606772 1639 ntBASIC28.84■■■□□ 2.21
NPHP1O15259 IRS3P-201ENST00000223076 1006 ntBASIC28.84■■■□□ 2.21
NPHP1O15259 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
NPHP1O15259 AL162430.1-201ENST00000480705 870 ntBASIC28.84■■■□□ 2.21
NPHP1O15259 AL138724.1-201ENST00000606771 1088 ntBASIC28.84■■■□□ 2.21
NPHP1O15259 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC28.84■■■□□ 2.21
NPHP1O15259 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC28.84■■■□□ 2.21
NPHP1O15259 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC28.83■■■□□ 2.21
NPHP1O15259 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC28.83■■■□□ 2.21
NPHP1O15259 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
NPHP1O15259 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
NPHP1O15259 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC28.83■■■□□ 2.21
NPHP1O15259 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC28.83■■■□□ 2.21
NPHP1O15259 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
NPHP1O15259 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC28.83■■■□□ 2.21
NPHP1O15259 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
NPHP1O15259 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
NPHP1O15259 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
NPHP1O15259 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
NPHP1O15259 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
NPHP1O15259 AC092803.2-201ENST00000564287 1899 ntBASIC28.82■■■□□ 2.2
NPHP1O15259 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC28.82■■■□□ 2.2
NPHP1O15259 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
NPHP1O15259 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
NPHP1O15259 AL022069.1-201ENST00000568025 1636 ntBASIC28.81■■■□□ 2.2
NPHP1O15259 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
NPHP1O15259 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC28.81■■■□□ 2.2
NPHP1O15259 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC28.8■■■□□ 2.2
NPHP1O15259 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
NPHP1O15259 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
NPHP1O15259 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC28.8■■■□□ 2.2
NPHP1O15259 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
NPHP1O15259 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC28.79■■■□□ 2.2
NPHP1O15259 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
NPHP1O15259 HES6-206ENST00000409574 738 ntTSL 2 BASIC28.79■■■□□ 2.2
NPHP1O15259 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC28.79■■■□□ 2.2
NPHP1O15259 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC28.79■■■□□ 2.2
NPHP1O15259 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
NPHP1O15259 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
NPHP1O15259 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
NPHP1O15259 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
NPHP1O15259 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC28.78■■■□□ 2.2
NPHP1O15259 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
NPHP1O15259 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
NPHP1O15259 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
NPHP1O15259 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
NPHP1O15259 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC28.77■■■□□ 2.2
NPHP1O15259 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
NPHP1O15259 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC28.77■■■□□ 2.2
NPHP1O15259 AC241377.3-202ENST00000626088 1088 ntBASIC28.77■■■□□ 2.2
NPHP1O15259 AC241585.3-202ENST00000628937 1088 ntBASIC28.77■■■□□ 2.2
NPHP1O15259 AC245100.8-202ENST00000629247 1058 ntBASIC28.77■■■□□ 2.2
NPHP1O15259 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC28.77■■■□□ 2.2
NPHP1O15259 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC28.76■■■□□ 2.2
NPHP1O15259 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC28.76■■■□□ 2.2
NPHP1O15259 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
NPHP1O15259 RHOF-204ENST00000537265 699 ntTSL 2 BASIC28.76■■■□□ 2.19
NPHP1O15259 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC28.76■■■□□ 2.19
NPHP1O15259 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.19
NPHP1O15259 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
NPHP1O15259 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC28.76■■■□□ 2.19
NPHP1O15259 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
NPHP1O15259 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
NPHP1O15259 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
NPHP1O15259 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
NPHP1O15259 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC28.75■■■□□ 2.19
NPHP1O15259 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
NPHP1O15259 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
NPHP1O15259 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
NPHP1O15259 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC28.75■■■□□ 2.19
NPHP1O15259 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
NPHP1O15259 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC28.75■■■□□ 2.19
NPHP1O15259 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC28.74■■■□□ 2.19
NPHP1O15259 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC28.74■■■□□ 2.19
NPHP1O15259 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC28.74■■■□□ 2.19
NPHP1O15259 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC28.74■■■□□ 2.19
NPHP1O15259 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC28.73■■■□□ 2.19
NPHP1O15259 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms