Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
MMP28Q9H239 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.28□□□□□ -0.28
MMP28Q9H239 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 AC073548.1-201ENST00000624088 1882 ntBASIC13.28□□□□□ -0.28
MMP28Q9H239 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
MMP28Q9H239 STOM-202ENST00000347359 870 ntTSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 PTMS-202ENST00000389462 773 ntTSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 AC142381.1-201ENST00000426099 345 ntBASIC13.28□□□□□ -0.28
MMP28Q9H239 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC13.28□□□□□ -0.28
MMP28Q9H239 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 TMEM198B-204ENST00000484016 896 ntBASIC13.28□□□□□ -0.28
MMP28Q9H239 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC13.28□□□□□ -0.28
MMP28Q9H239 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC13.28□□□□□ -0.28
MMP28Q9H239 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC13.28□□□□□ -0.28
MMP28Q9H239 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.28□□□□□ -0.28
MMP28Q9H239 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.28□□□□□ -0.28
MMP28Q9H239 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC13.28□□□□□ -0.28
MMP28Q9H239 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC13.28□□□□□ -0.28
MMP28Q9H239 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 LINC01225-203ENST00000563550 1244 ntBASIC13.28□□□□□ -0.28
MMP28Q9H239 AC024267.1-201ENST00000582320 895 ntBASIC13.28□□□□□ -0.28
MMP28Q9H239 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 ORC5-208ENST00000626700 344 ntTSL 3 BASIC13.28□□□□□ -0.28
MMP28Q9H239 AL513210.1-201ENST00000629608 234 ntBASIC13.28□□□□□ -0.28
MMP28Q9H239 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.28□□□□□ -0.28
MMP28Q9H239 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 AC073869.1-201ENST00000415574 2762 ntBASIC13.28□□□□□ -0.28
MMP28Q9H239 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC13.28□□□□□ -0.28
MMP28Q9H239 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
MMP28Q9H239 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 BNIP3P1-202ENST00000550043 1585 ntBASIC13.28□□□□□ -0.28
MMP28Q9H239 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.27□□□□□ -0.28
MMP28Q9H239 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.28
MMP28Q9H239 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
MMP28Q9H239 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC13.27□□□□□ -0.28
MMP28Q9H239 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
MMP28Q9H239 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
MMP28Q9H239 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC13.27□□□□□ -0.28
MMP28Q9H239 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.28
MMP28Q9H239 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
MMP28Q9H239 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC13.27□□□□□ -0.28
MMP28Q9H239 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
MMP28Q9H239 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
MMP28Q9H239 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
MMP28Q9H239 OS9-206ENST00000435406 2346 ntTSL 2 BASIC13.27□□□□□ -0.28
MMP28Q9H239 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC13.27□□□□□ -0.29
MMP28Q9H239 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.27□□□□□ -0.29
MMP28Q9H239 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC13.27□□□□□ -0.29
MMP28Q9H239 MIR346-201ENST00000362234 95 ntBASIC13.27□□□□□ -0.29
MMP28Q9H239 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC13.27□□□□□ -0.29
MMP28Q9H239 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC13.27□□□□□ -0.29
MMP28Q9H239 AC005237.2-201ENST00000434368 219 ntBASIC13.27□□□□□ -0.29
MMP28Q9H239 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC13.27□□□□□ -0.29
MMP28Q9H239 AC069335.1-201ENST00000489972 472 ntBASIC13.27□□□□□ -0.29
MMP28Q9H239 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC13.27□□□□□ -0.29
MMP28Q9H239 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC13.27□□□□□ -0.29
MMP28Q9H239 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC13.27□□□□□ -0.29
MMP28Q9H239 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC13.27□□□□□ -0.29
MMP28Q9H239 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC13.27□□□□□ -0.29
MMP28Q9H239 TSFM-210ENST00000550559 897 ntTSL 5 BASIC13.27□□□□□ -0.29
MMP28Q9H239 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
MMP28Q9H239 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC13.27□□□□□ -0.29
MMP28Q9H239 AC011467.4-201ENST00000594891 528 ntBASIC13.27□□□□□ -0.29
MMP28Q9H239 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC13.27□□□□□ -0.29
MMP28Q9H239 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.27□□□□□ -0.29
MMP28Q9H239 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.27□□□□□ -0.29
MMP28Q9H239 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms