Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 AC073548.1-201ENST00000624088 1882 ntBASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 AL353779.1-201ENST00000434793 351 ntBASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 YBX1P5-201ENST00000509441 847 ntBASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 OS9-206ENST00000435406 2346 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC28BQ9BUN5 STK40-201ENST00000359297 4837 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 AL158070.2-201ENST00000623713 1621 ntBASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 RN7SL832P-201ENST00000607781 1756 ntBASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 AC114271.1-201ENST00000612689 2813 ntBASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 KRT18P58-201ENST00000527480 1120 ntBASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 AL512356.2-201ENST00000546955 174 ntBASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 TEX28P1-201ENST00000613479 1221 ntBASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 449.8 ms