Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HTTP42858 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 AC022080.1-201ENST00000366255 781 ntBASIC16.19■□□□□ 0.18
HTTP42858 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 GOLGA6L16P-201ENST00000441780 1299 ntBASIC16.19■□□□□ 0.18
HTTP42858 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 AC025186.1-201ENST00000478174 870 ntBASIC16.19■□□□□ 0.18
HTTP42858 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC16.19■□□□□ 0.18
HTTP42858 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 MIR4746-201ENST00000579802 71 ntBASIC16.19■□□□□ 0.18
HTTP42858 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC16.19■□□□□ 0.18
HTTP42858 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC16.19■□□□□ 0.18
HTTP42858 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC16.19■□□□□ 0.18
HTTP42858 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC16.19■□□□□ 0.18
HTTP42858 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
HTTP42858 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
HTTP42858 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC16.19■□□□□ 0.18
HTTP42858 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 CDK4P1-201ENST00000454213 828 ntBASIC16.19■□□□□ 0.18
HTTP42858 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC16.19■□□□□ 0.18
HTTP42858 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HTTP42858 DLK1-205ENST00000556051 469 ntTSL 2 BASIC16.19■□□□□ 0.18
HTTP42858 RN7SL121P-201ENST00000584223 273 ntBASIC16.19■□□□□ 0.18
HTTP42858 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC16.19■□□□□ 0.18
HTTP42858 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HTTP42858 NEK4P3-201ENST00000604859 544 ntBASIC16.19■□□□□ 0.18
HTTP42858 NF1P11-201ENST00000621292 1282 ntBASIC16.19■□□□□ 0.18
HTTP42858 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.19■□□□□ 0.18
HTTP42858 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.19■□□□□ 0.18
HTTP42858 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.19■□□□□ 0.18
HTTP42858 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HTTP42858 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.19■□□□□ 0.18
HTTP42858 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HTTP42858 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC16.19■□□□□ 0.18
HTTP42858 KLF17P1-201ENST00000547105 1126 ntBASIC16.19■□□□□ 0.18
HTTP42858 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC16.19■□□□□ 0.18
HTTP42858 AC005746.3-201ENST00000614751 393 ntBASIC16.19■□□□□ 0.18
HTTP42858 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.18■□□□□ 0.18
HTTP42858 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 CASP2-203ENST00000392925 616 ntTSL 3 BASIC16.18■□□□□ 0.18
HTTP42858 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC16.18■□□□□ 0.18
HTTP42858 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC16.18■□□□□ 0.18
HTTP42858 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC16.18■□□□□ 0.18
HTTP42858 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 INO80E-209ENST00000567254 625 ntTSL 2 BASIC16.18■□□□□ 0.18
HTTP42858 HNRNPA1P16-201ENST00000575692 955 ntBASIC16.18■□□□□ 0.18
HTTP42858 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HTTP42858 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
HTTP42858 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 HLF-202ENST00000430986 1385 ntTSL 2 BASIC16.18■□□□□ 0.18
HTTP42858 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC16.18■□□□□ 0.18
HTTP42858 RN7SL128P-201ENST00000467883 305 ntBASIC16.18■□□□□ 0.18
HTTP42858 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC16.18■□□□□ 0.18
HTTP42858 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC16.18■□□□□ 0.18
HTTP42858 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC16.18■□□□□ 0.18
HTTP42858 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HTTP42858 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HTTP42858 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC16.18■□□□□ 0.18
HTTP42858 AC023024.2-201ENST00000623561 1993 ntBASIC16.17■□□□□ 0.18
HTTP42858 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC16.17■□□□□ 0.18
HTTP42858 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC16.17■□□□□ 0.18
HTTP42858 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.17■□□□□ 0.18
HTTP42858 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms