Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.31□□□□□ -0.12
MSX2P35548 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
MSX2P35548 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
MSX2P35548 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC14.31□□□□□ -0.12
MSX2P35548 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.31□□□□□ -0.12
MSX2P35548 FAM58DP-201ENST00000428076 619 ntBASIC14.31□□□□□ -0.12
MSX2P35548 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC14.31□□□□□ -0.12
MSX2P35548 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC14.31□□□□□ -0.12
MSX2P35548 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.31□□□□□ -0.12
MSX2P35548 LINC00628-201ENST00000628516 1289 ntBASIC14.31□□□□□ -0.12
MSX2P35548 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.31□□□□□ -0.12
MSX2P35548 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
MSX2P35548 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC14.31□□□□□ -0.12
MSX2P35548 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.31□□□□□ -0.12
MSX2P35548 IL9RP2-201ENST00000423948 1312 ntBASIC14.31□□□□□ -0.12
MSX2P35548 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
MSX2P35548 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.31□□□□□ -0.12
MSX2P35548 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
MSX2P35548 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MSX2P35548 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX2P35548 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC14.3□□□□□ -0.12
MSX2P35548 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 TNN-202ENST00000621086 4234 ntTSL 5 BASIC14.3□□□□□ -0.12
MSX2P35548 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC14.3□□□□□ -0.12
MSX2P35548 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
MSX2P35548 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX2P35548 HADH-202ENST00000403312 1752 ntTSL 5 BASIC14.3□□□□□ -0.12
MSX2P35548 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX2P35548 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.3□□□□□ -0.12
MSX2P35548 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX2P35548 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC14.3□□□□□ -0.12
MSX2P35548 AC015922.1-201ENST00000421102 1152 ntBASIC14.3□□□□□ -0.12
MSX2P35548 MED15P5-201ENST00000423150 992 ntBASIC14.3□□□□□ -0.12
MSX2P35548 TMEM198B-204ENST00000484016 896 ntBASIC14.3□□□□□ -0.12
MSX2P35548 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.3□□□□□ -0.12
MSX2P35548 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX2P35548 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
MSX2P35548 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX2P35548 AC025048.3-201ENST00000590609 569 ntBASIC14.3□□□□□ -0.12
MSX2P35548 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 AC005702.4-201ENST00000618393 416 ntBASIC14.3□□□□□ -0.12
MSX2P35548 AC055717.3-201ENST00000622967 595 ntBASIC14.3□□□□□ -0.12
MSX2P35548 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
MSX2P35548 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX2P35548 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC14.3□□□□□ -0.12
MSX2P35548 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.3□□□□□ -0.12
MSX2P35548 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX2P35548 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX2P35548 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX2P35548 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX2P35548 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
MSX2P35548 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 AL445209.1-201ENST00000607269 3491 ntBASIC14.29□□□□□ -0.12
MSX2P35548 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms