Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 REXO1L4P-201ENST00000605109 1937 ntBASIC11.28□□□□□ -0.6
COL6A5A8TX70 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 GH1-203ENST00000351388 685 ntTSL 2 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 RN7SL524P-201ENST00000581152 300 ntBASIC11.28□□□□□ -0.6
COL6A5A8TX70 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC11.28□□□□□ -0.6
COL6A5A8TX70 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC11.28□□□□□ -0.6
COL6A5A8TX70 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC11.27□□□□□ -0.6
COL6A5A8TX70 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
COL6A5A8TX70 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
COL6A5A8TX70 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
COL6A5A8TX70 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
COL6A5A8TX70 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
COL6A5A8TX70 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
COL6A5A8TX70 DNM1P48-201ENST00000419538 439 ntBASIC11.27□□□□□ -0.6
COL6A5A8TX70 ASS1P2-201ENST00000439895 1223 ntBASIC11.27□□□□□ -0.6
COL6A5A8TX70 POLR2LP1-206ENST00000444785 187 ntBASIC11.27□□□□□ -0.6
COL6A5A8TX70 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC11.27□□□□□ -0.6
COL6A5A8TX70 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC11.27□□□□□ -0.6
COL6A5A8TX70 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
COL6A5A8TX70 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.6
COL6A5A8TX70 DLK1-205ENST00000556051 469 ntTSL 2 BASIC11.27□□□□□ -0.6
COL6A5A8TX70 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC11.27□□□□□ -0.6
COL6A5A8TX70 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC11.27□□□□□ -0.6
COL6A5A8TX70 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC11.27□□□□□ -0.6
COL6A5A8TX70 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC11.27□□□□□ -0.6
COL6A5A8TX70 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
COL6A5A8TX70 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.6
COL6A5A8TX70 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
COL6A5A8TX70 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
COL6A5A8TX70 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
COL6A5A8TX70 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC11.27□□□□□ -0.6
COL6A5A8TX70 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
COL6A5A8TX70 AC124067.4-201ENST00000519691 2379 ntBASIC11.27□□□□□ -0.6
COL6A5A8TX70 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
COL6A5A8TX70 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
COL6A5A8TX70 DBET-201ENST00000630918 3363 ntBASIC11.27□□□□□ -0.61
COL6A5A8TX70 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
COL6A5A8TX70 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC11.27□□□□□ -0.61
COL6A5A8TX70 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC11.27□□□□□ -0.61
COL6A5A8TX70 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
COL6A5A8TX70 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
COL6A5A8TX70 MSANTD2P1-201ENST00000445341 1368 ntBASIC11.27□□□□□ -0.61
COL6A5A8TX70 SHMT1P1-201ENST00000419974 1312 ntBASIC11.27□□□□□ -0.61
COL6A5A8TX70 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
COL6A5A8TX70 FAM25A-201ENST00000343959 345 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
COL6A5A8TX70 AL627095.1-201ENST00000414775 321 ntBASIC11.27□□□□□ -0.61
COL6A5A8TX70 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC11.27□□□□□ -0.61
COL6A5A8TX70 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC11.27□□□□□ -0.61
COL6A5A8TX70 FAM86JP-202ENST00000484500 988 ntBASIC11.27□□□□□ -0.61
COL6A5A8TX70 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC11.27□□□□□ -0.61
COL6A5A8TX70 ALG1L7P-201ENST00000502317 768 ntBASIC11.27□□□□□ -0.61
COL6A5A8TX70 AC004801.1-201ENST00000549557 360 ntBASIC11.27□□□□□ -0.61
COL6A5A8TX70 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC11.27□□□□□ -0.61
COL6A5A8TX70 IFNL3P1-201ENST00000595082 501 ntBASIC11.27□□□□□ -0.61
COL6A5A8TX70 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC11.27□□□□□ -0.61
COL6A5A8TX70 BX322534.1-201ENST00000635574 241 ntBASIC11.27□□□□□ -0.61
COL6A5A8TX70 AC215524.1-201ENST00000635696 241 ntBASIC11.27□□□□□ -0.61
COL6A5A8TX70 AL590556.2-202ENST00000636906 844 ntBASIC11.27□□□□□ -0.61
COL6A5A8TX70 AC002511.3-201ENST00000638098 420 ntBASIC11.27□□□□□ -0.61
COL6A5A8TX70 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
COL6A5A8TX70 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
COL6A5A8TX70 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
COL6A5A8TX70 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC11.27□□□□□ -0.61
COL6A5A8TX70 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC11.27□□□□□ -0.61
COL6A5A8TX70 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
COL6A5A8TX70 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
COL6A5A8TX70 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC11.27□□□□□ -0.61
COL6A5A8TX70 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
COL6A5A8TX70 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC11.27□□□□□ -0.61
COL6A5A8TX70 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
COL6A5A8TX70 AC006504.5-208ENST00000588784 2401 ntBASIC11.26□□□□□ -0.61
COL6A5A8TX70 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
COL6A5A8TX70 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms