Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 AC005829.1-201ENST00000570002 483 ntBASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 TUBB3P1-201ENST00000405796 1332 ntBASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
CCDC28BQ9BUN5 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC28BQ9BUN5 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC28BQ9BUN5 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
CCDC28BQ9BUN5 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC28BQ9BUN5 KRT8P14-201ENST00000414254 1442 ntBASIC14.58□□□□□ -0.07
CCDC28BQ9BUN5 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC28BQ9BUN5 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
CCDC28BQ9BUN5 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC28BQ9BUN5 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.07
CCDC28BQ9BUN5 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC14.58□□□□□ -0.07
CCDC28BQ9BUN5 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC28BQ9BUN5 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 MIR940-201ENST00000401276 94 ntBASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 HLA-V-204ENST00000476601 1289 ntBASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 RN7SL618P-201ENST00000477850 296 ntBASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 AP000344.2-201ENST00000512987 629 ntBASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 AC010336.2-201ENST00000564226 506 ntBASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 AC051619.7-201ENST00000568314 623 ntBASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 KLK8-205ENST00000593490 267 ntTSL 3 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 AL109936.8-201ENST00000641772 604 ntBASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 MAPT-IT1-201ENST00000624111 3016 ntBASIC14.58□□□□□ -0.08
CCDC28BQ9BUN5 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 AC004835.2-201ENST00000603762 682 ntBASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC28BQ9BUN5 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms