Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 AGGF1P1-201ENST00000509500 2073 ntBASIC11.25□□□□□ -0.61
LINC00477Q96M19 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 RASL12-203ENST00000434605 982 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 AL359881.3-201ENST00000602640 1721 ntBASIC11.25□□□□□ -0.61
LINC00477Q96M19 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 USP4-203ENST00000415188 1454 ntTSL 3 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00477Q96M19 AC022144.1-201ENST00000602255 1580 ntBASIC11.24□□□□□ -0.61
LINC00477Q96M19 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC11.24□□□□□ -0.61
LINC00477Q96M19 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00477Q96M19 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00477Q96M19 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC11.24□□□□□ -0.61
LINC00477Q96M19 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC11.24□□□□□ -0.61
LINC00477Q96M19 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
LINC00477Q96M19 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC11.24□□□□□ -0.61
LINC00477Q96M19 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 RPS15-201ENST00000233609 534 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00477Q96M19 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 HLA-DRB6-201ENST00000411500 1235 ntBASIC11.24□□□□□ -0.61
LINC00477Q96M19 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC11.24□□□□□ -0.61
LINC00477Q96M19 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00477Q96M19 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC11.24□□□□□ -0.61
LINC00477Q96M19 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC11.24□□□□□ -0.61
LINC00477Q96M19 AC114812.1-204ENST00000449669 728 ntBASIC11.24□□□□□ -0.61
LINC00477Q96M19 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
LINC00477Q96M19 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00477Q96M19 AC022616.1-201ENST00000518688 554 ntBASIC11.24□□□□□ -0.61
LINC00477Q96M19 TPRX2P-201ENST00000535362 881 ntBASIC11.24□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms