Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 AC026954.1-201ENST00000429771 1293 ntBASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 C2orf69P2-201ENST00000562032 1123 ntBASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 AC138696.2-201ENST00000607376 223 ntBASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 AC092135.3-201ENST00000624151 1846 ntBASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHROOM3Q8TF72 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 MIR4783-201ENST00000580343 82 ntBASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHROOM3Q8TF72 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 RN7SKP230-201ENST00000365642 335 ntBASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 AC006033.1-201ENST00000440505 426 ntBASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 OR10B1P-201ENST00000601666 907 ntBASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 AL021578.1-201ENST00000613646 709 ntBASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 MTX1P1-201ENST00000440904 838 ntBASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 AC131206.1-201ENST00000538078 1211 ntBASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 AC106872.11-201ENST00000605838 421 ntBASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms