Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HDDC3Q8N4P3 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
HDDC3Q8N4P3 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HDDC3Q8N4P3 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HDDC3Q8N4P3 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.98□□□□□ -0.01
HDDC3Q8N4P3 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HDDC3Q8N4P3 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HDDC3Q8N4P3 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.98□□□□□ -0.01
HDDC3Q8N4P3 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HDDC3Q8N4P3 AC023090.2-201ENST00000625182 2110 ntBASIC14.98□□□□□ -0.01
HDDC3Q8N4P3 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HDDC3Q8N4P3 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HDDC3Q8N4P3 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
HDDC3Q8N4P3 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 MPV17-204ENST00000399052 749 ntTSL 4 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 AC007274.2-201ENST00000421675 662 ntBASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 TUBB8P8-201ENST00000458717 1058 ntBASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 EID1-202ENST00000560490 584 ntTSL 3 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 RN7SL774P-201ENST00000577467 290 ntBASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 AC022748.3-201ENST00000621828 275 ntBASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 AL162426.1-201ENST00000624141 743 ntBASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 SALL4P5-201ENST00000419001 1760 ntBASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 E2F3P2-201ENST00000447755 1422 ntBASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.97□□□□□ -0.01
HDDC3Q8N4P3 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 AC003102.2-201ENST00000589195 1469 ntBASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 DUX4L46-201ENST00000566845 751 ntBASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 RN7SL163P-201ENST00000583100 276 ntBASIC14.96□□□□□ -0.01
HDDC3Q8N4P3 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms