Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.38□□□□□ -0.27
H3F3AP84243 AC138951.2-201ENST00000623455 1161 ntBASIC13.38□□□□□ -0.27
H3F3AP84243 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
H3F3AP84243 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
H3F3AP84243 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
H3F3AP84243 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
H3F3AP84243 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
H3F3AP84243 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
H3F3AP84243 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.38□□□□□ -0.27
H3F3AP84243 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
H3F3AP84243 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.38□□□□□ -0.27
H3F3AP84243 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
H3F3AP84243 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
H3F3AP84243 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
H3F3AP84243 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
H3F3AP84243 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
H3F3AP84243 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
H3F3AP84243 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
H3F3AP84243 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.38□□□□□ -0.27
H3F3AP84243 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.38□□□□□ -0.27
H3F3AP84243 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.37□□□□□ -0.27
H3F3AP84243 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.37□□□□□ -0.27
H3F3AP84243 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.37□□□□□ -0.27
H3F3AP84243 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC13.37□□□□□ -0.27
H3F3AP84243 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
H3F3AP84243 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.37□□□□□ -0.27
H3F3AP84243 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 AC234783.1-201ENST00000441761 496 ntBASIC13.37□□□□□ -0.27
H3F3AP84243 KLF2P4-201ENST00000451959 1225 ntBASIC13.37□□□□□ -0.27
H3F3AP84243 GPR53P-205ENST00000457298 1084 ntBASIC13.37□□□□□ -0.27
H3F3AP84243 AL391280.1-201ENST00000506969 1062 ntBASIC13.37□□□□□ -0.27
H3F3AP84243 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.37□□□□□ -0.27
H3F3AP84243 AP003171.2-201ENST00000528208 925 ntBASIC13.37□□□□□ -0.27
H3F3AP84243 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
H3F3AP84243 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.37□□□□□ -0.27
H3F3AP84243 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC13.37□□□□□ -0.27
H3F3AP84243 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
H3F3AP84243 AC079316.1-201ENST00000548397 411 ntBASIC13.37□□□□□ -0.27
H3F3AP84243 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.37□□□□□ -0.27
H3F3AP84243 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.37□□□□□ -0.27
H3F3AP84243 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
H3F3AP84243 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC13.37□□□□□ -0.27
H3F3AP84243 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 AC239800.4-201ENST00000603712 296 ntBASIC13.37□□□□□ -0.27
H3F3AP84243 BX088702.1-201ENST00000610784 235 ntBASIC13.37□□□□□ -0.27
H3F3AP84243 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.37□□□□□ -0.27
H3F3AP84243 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 AC011840.2-201ENST00000563063 1520 ntBASIC13.37□□□□□ -0.27
H3F3AP84243 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
H3F3AP84243 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.37□□□□□ -0.27
H3F3AP84243 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 MTHFR-210ENST00000641407 2387 ntBASIC13.37□□□□□ -0.27
H3F3AP84243 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
H3F3AP84243 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.37□□□□□ -0.27
H3F3AP84243 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.37□□□□□ -0.27
H3F3AP84243 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
H3F3AP84243 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
H3F3AP84243 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
H3F3AP84243 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.37□□□□□ -0.27
H3F3AP84243 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
H3F3AP84243 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.36□□□□□ -0.27
H3F3AP84243 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.36□□□□□ -0.27
H3F3AP84243 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
H3F3AP84243 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
H3F3AP84243 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
H3F3AP84243 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
H3F3AP84243 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
H3F3AP84243 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
H3F3AP84243 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
H3F3AP84243 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
H3F3AP84243 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
H3F3AP84243 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
H3F3AP84243 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
H3F3AP84243 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.36□□□□□ -0.27
H3F3AP84243 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
H3F3AP84243 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
H3F3AP84243 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
H3F3AP84243 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
H3F3AP84243 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 153.6 ms