Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIMK1P53667 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
LIMK1P53667 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.72□□□□□ -0.05
LIMK1P53667 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIMK1P53667 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.71□□□□□ -0.05
LIMK1P53667 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.05
LIMK1P53667 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.71□□□□□ -0.05
LIMK1P53667 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 AL359258.3-201ENST00000622910 2331 ntBASIC14.71□□□□□ -0.05
LIMK1P53667 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 CLUHP2-201ENST00000426660 1303 ntBASIC14.71□□□□□ -0.05
LIMK1P53667 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
LIMK1P53667 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.71□□□□□ -0.05
LIMK1P53667 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
LIMK1P53667 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.71□□□□□ -0.05
LIMK1P53667 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 AC011477.6-201ENST00000604980 1927 ntBASIC14.71□□□□□ -0.05
LIMK1P53667 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
LIMK1P53667 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 AP000356.3-201ENST00000382243 753 ntBASIC14.71□□□□□ -0.05
LIMK1P53667 MIR648-201ENST00000385046 94 ntBASIC14.71□□□□□ -0.05
LIMK1P53667 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 AL592076.1-201ENST00000424448 303 ntBASIC14.71□□□□□ -0.05
LIMK1P53667 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC14.71□□□□□ -0.05
LIMK1P53667 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC14.71□□□□□ -0.05
LIMK1P53667 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC14.71□□□□□ -0.05
LIMK1P53667 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC14.71□□□□□ -0.05
LIMK1P53667 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.71□□□□□ -0.05
LIMK1P53667 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.71□□□□□ -0.05
LIMK1P53667 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC14.71□□□□□ -0.05
LIMK1P53667 FO393412.1-201ENST00000619841 382 ntBASIC14.71□□□□□ -0.05
LIMK1P53667 AL132780.4-201ENST00000624870 1135 ntBASIC14.71□□□□□ -0.05
LIMK1P53667 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC14.71□□□□□ -0.05
LIMK1P53667 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.71□□□□□ -0.05
LIMK1P53667 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.71□□□□□ -0.05
LIMK1P53667 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIMK1P53667 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
LIMK1P53667 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
LIMK1P53667 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
LIMK1P53667 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.71□□□□□ -0.06
LIMK1P53667 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
LIMK1P53667 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
LIMK1P53667 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.71□□□□□ -0.06
LIMK1P53667 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
LIMK1P53667 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
LIMK1P53667 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
LIMK1P53667 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.71□□□□□ -0.06
LIMK1P53667 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.06
LIMK1P53667 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
LIMK1P53667 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
LIMK1P53667 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
LIMK1P53667 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
LIMK1P53667 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.7□□□□□ -0.06
LIMK1P53667 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.7□□□□□ -0.06
LIMK1P53667 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.7□□□□□ -0.06
LIMK1P53667 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC14.7□□□□□ -0.06
LIMK1P53667 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 AC012362.1-201ENST00000434906 739 ntBASIC14.7□□□□□ -0.06
LIMK1P53667 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC14.7□□□□□ -0.06
LIMK1P53667 NAGK-204ENST00000443872 878 ntTSL 3 BASIC14.7□□□□□ -0.06
LIMK1P53667 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.7□□□□□ -0.06
LIMK1P53667 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.7□□□□□ -0.06
LIMK1P53667 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC14.7□□□□□ -0.06
LIMK1P53667 RBM8B-201ENST00000555532 525 ntBASIC14.7□□□□□ -0.06
LIMK1P53667 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
LIMK1P53667 DUX4L46-201ENST00000566845 751 ntBASIC14.7□□□□□ -0.06
LIMK1P53667 AC026803.1-201ENST00000569130 274 ntBASIC14.7□□□□□ -0.06
LIMK1P53667 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC14.7□□□□□ -0.06
LIMK1P53667 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC14.7□□□□□ -0.06
LIMK1P53667 AC005632.3-201ENST00000605544 308 ntBASIC14.7□□□□□ -0.06
LIMK1P53667 AL358472.3-201ENST00000608147 415 ntBASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms