Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 AC106047.2-201ENST00000511723 743 ntBASIC17.19■□□□□ 0.34
CTCFP49711 AC114947.1-202ENST00000514136 344 ntBASIC17.19■□□□□ 0.34
CTCFP49711 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC17.19■□□□□ 0.34
CTCFP49711 RN7SL121P-201ENST00000584223 273 ntBASIC17.19■□□□□ 0.34
CTCFP49711 AC004466.1-201ENST00000599515 1080 ntBASIC17.19■□□□□ 0.34
CTCFP49711 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 CMC2-224ENST00000630396 481 ntTSL 5 BASIC17.19■□□□□ 0.34
CTCFP49711 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC17.19■□□□□ 0.34
CTCFP49711 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
CTCFP49711 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.19■□□□□ 0.34
CTCFP49711 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.19■□□□□ 0.34
CTCFP49711 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.19■□□□□ 0.34
CTCFP49711 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.19■□□□□ 0.34
CTCFP49711 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CTCFP49711 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 CTBP2P8-201ENST00000422584 1330 ntBASIC17.19■□□□□ 0.34
CTCFP49711 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
CTCFP49711 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.18■□□□□ 0.34
CTCFP49711 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC17.18■□□□□ 0.34
CTCFP49711 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.18■□□□□ 0.34
CTCFP49711 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CTCFP49711 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.18■□□□□ 0.34
CTCFP49711 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 PHB-210ENST00000511832 1509 ntTSL 2 BASIC17.18■□□□□ 0.34
CTCFP49711 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.18■□□□□ 0.34
CTCFP49711 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC17.18■□□□□ 0.34
CTCFP49711 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC17.18■□□□□ 0.34
CTCFP49711 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC17.18■□□□□ 0.34
CTCFP49711 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC17.18■□□□□ 0.34
CTCFP49711 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.18■□□□□ 0.34
CTCFP49711 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC17.18■□□□□ 0.34
CTCFP49711 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC17.18■□□□□ 0.34
CTCFP49711 Z98259.2-201ENST00000641583 609 ntBASIC17.18■□□□□ 0.34
CTCFP49711 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CTCFP49711 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CTCFP49711 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.18■□□□□ 0.34
CTCFP49711 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.18■□□□□ 0.34
CTCFP49711 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.18■□□□□ 0.34
CTCFP49711 RAN-210ENST00000541630 1475 ntTSL 2 BASIC17.18■□□□□ 0.34
CTCFP49711 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.18■□□□□ 0.34
CTCFP49711 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CTCFP49711 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC17.17■□□□□ 0.34
CTCFP49711 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.17■□□□□ 0.34
CTCFP49711 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.17■□□□□ 0.34
CTCFP49711 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.17■□□□□ 0.34
CTCFP49711 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC17.17■□□□□ 0.34
CTCFP49711 RPL14-203ENST00000416518 812 ntTSL 3 BASIC17.17■□□□□ 0.34
CTCFP49711 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CTCFP49711 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC17.17■□□□□ 0.34
CTCFP49711 VENTXP4-201ENST00000449029 958 ntBASIC17.17■□□□□ 0.34
CTCFP49711 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CTCFP49711 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC17.17■□□□□ 0.34
CTCFP49711 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC17.17■□□□□ 0.34
CTCFP49711 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms