Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
HNF4AP41235 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
HNF4AP41235 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.56□□□□□ -0.08
HNF4AP41235 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
HNF4AP41235 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.56□□□□□ -0.08
HNF4AP41235 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
HNF4AP41235 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.56□□□□□ -0.08
HNF4AP41235 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
HNF4AP41235 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
HNF4AP41235 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.56□□□□□ -0.08
HNF4AP41235 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HNF4AP41235 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.56□□□□□ -0.08
HNF4AP41235 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.56□□□□□ -0.08
HNF4AP41235 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.56□□□□□ -0.08
HNF4AP41235 RN7SL837P-201ENST00000463010 287 ntBASIC14.56□□□□□ -0.08
HNF4AP41235 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.56□□□□□ -0.08
HNF4AP41235 AC011495.1-201ENST00000498085 584 ntBASIC14.56□□□□□ -0.08
HNF4AP41235 KRT18P25-201ENST00000508931 1278 ntBASIC14.56□□□□□ -0.08
HNF4AP41235 TDH-203ENST00000531764 1110 ntBASIC14.56□□□□□ -0.08
HNF4AP41235 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HNF4AP41235 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.56□□□□□ -0.08
HNF4AP41235 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
HNF4AP41235 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
HNF4AP41235 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.56□□□□□ -0.08
HNF4AP41235 AP001063.1-201ENST00000568332 529 ntBASIC14.56□□□□□ -0.08
HNF4AP41235 AC132938.2-201ENST00000579188 680 ntBASIC14.56□□□□□ -0.08
HNF4AP41235 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.56□□□□□ -0.08
HNF4AP41235 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.56□□□□□ -0.08
HNF4AP41235 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
HNF4AP41235 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.56□□□□□ -0.08
HNF4AP41235 AL591163.1-201ENST00000641757 987 ntBASIC14.56□□□□□ -0.08
HNF4AP41235 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.56□□□□□ -0.08
HNF4AP41235 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
HNF4AP41235 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.56□□□□□ -0.08
HNF4AP41235 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.56□□□□□ -0.08
HNF4AP41235 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HNF4AP41235 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.56□□□□□ -0.08
HNF4AP41235 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.56□□□□□ -0.08
HNF4AP41235 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.56□□□□□ -0.08
HNF4AP41235 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.56□□□□□ -0.08
HNF4AP41235 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.56□□□□□ -0.08
HNF4AP41235 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HNF4AP41235 LRRC59-203ENST00000576448 1531 ntBASIC14.56□□□□□ -0.08
HNF4AP41235 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
HNF4AP41235 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
HNF4AP41235 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
HNF4AP41235 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.55□□□□□ -0.08
HNF4AP41235 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
HNF4AP41235 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
HNF4AP41235 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.55□□□□□ -0.08
HNF4AP41235 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.55□□□□□ -0.08
HNF4AP41235 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.55□□□□□ -0.08
HNF4AP41235 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 AC113367.3-201ENST00000508316 1912 ntBASIC14.55□□□□□ -0.08
HNF4AP41235 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
HNF4AP41235 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.55□□□□□ -0.08
HNF4AP41235 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.55□□□□□ -0.08
HNF4AP41235 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 ACTBP8-201ENST00000403258 1108 ntBASIC14.55□□□□□ -0.08
HNF4AP41235 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.55□□□□□ -0.08
HNF4AP41235 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.55□□□□□ -0.08
HNF4AP41235 AC093433.1-201ENST00000458048 571 ntBASIC14.55□□□□□ -0.08
HNF4AP41235 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
HNF4AP41235 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
HNF4AP41235 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.55□□□□□ -0.08
HNF4AP41235 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms