Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ACTBP11-201ENST00000436287 1126 ntBASIC14.56□□□□□ -0.08
LDLRP01130 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
LDLRP01130 ELK1P1-201ENST00000485699 580 ntBASIC14.56□□□□□ -0.08
LDLRP01130 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
LDLRP01130 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.56□□□□□ -0.08
LDLRP01130 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC14.56□□□□□ -0.08
LDLRP01130 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.56□□□□□ -0.08
LDLRP01130 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.56□□□□□ -0.08
LDLRP01130 CTBP2P3-201ENST00000585629 1255 ntBASIC14.56□□□□□ -0.08
LDLRP01130 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.56□□□□□ -0.08
LDLRP01130 SRD5A3P1-201ENST00000603021 949 ntBASIC14.56□□□□□ -0.08
LDLRP01130 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.56□□□□□ -0.08
LDLRP01130 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 AC092135.3-201ENST00000624151 1846 ntBASIC14.56□□□□□ -0.08
LDLRP01130 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.56□□□□□ -0.08
LDLRP01130 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
LDLRP01130 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
LDLRP01130 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.55□□□□□ -0.08
LDLRP01130 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
LDLRP01130 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.55□□□□□ -0.08
LDLRP01130 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.55□□□□□ -0.08
LDLRP01130 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
LDLRP01130 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.55□□□□□ -0.08
LDLRP01130 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.55□□□□□ -0.08
LDLRP01130 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.55□□□□□ -0.08
LDLRP01130 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
LDLRP01130 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.55□□□□□ -0.08
LDLRP01130 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.55□□□□□ -0.08
LDLRP01130 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
LDLRP01130 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.55□□□□□ -0.08
LDLRP01130 BNIP3P42-201ENST00000454982 569 ntBASIC14.55□□□□□ -0.08
LDLRP01130 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.55□□□□□ -0.08
LDLRP01130 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.55□□□□□ -0.08
LDLRP01130 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC14.55□□□□□ -0.08
LDLRP01130 HNRNPUP1-201ENST00000554987 333 ntBASIC14.55□□□□□ -0.08
LDLRP01130 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
LDLRP01130 BNIP3P29-201ENST00000598302 571 ntBASIC14.55□□□□□ -0.08
LDLRP01130 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.55□□□□□ -0.08
LDLRP01130 AC097359.3-201ENST00000603982 1210 ntBASIC14.55□□□□□ -0.08
LDLRP01130 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.55□□□□□ -0.08
LDLRP01130 AC011447.5-201ENST00000616168 564 ntBASIC14.55□□□□□ -0.08
LDLRP01130 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.55□□□□□ -0.08
LDLRP01130 AL109936.8-201ENST00000641772 604 ntBASIC14.55□□□□□ -0.08
LDLRP01130 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
LDLRP01130 AC084364.1-201ENST00000551967 1556 ntBASIC14.55□□□□□ -0.08
LDLRP01130 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.55□□□□□ -0.08
LDLRP01130 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LDLRP01130 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.55□□□□□ -0.08
LDLRP01130 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.55□□□□□ -0.08
LDLRP01130 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
LDLRP01130 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.54□□□□□ -0.08
LDLRP01130 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.54□□□□□ -0.08
LDLRP01130 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 AC018529.2-202ENST00000611482 3087 ntBASIC14.54□□□□□ -0.08
LDLRP01130 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.54□□□□□ -0.08
LDLRP01130 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms