Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RNF40O75150 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
RNF40O75150 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
RNF40O75150 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC16.26■□□□□ 0.19
RNF40O75150 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
RNF40O75150 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.26■□□□□ 0.19
RNF40O75150 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.26■□□□□ 0.19
RNF40O75150 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
RNF40O75150 DGCR9-201ENST00000609630 2415 ntBASIC16.26■□□□□ 0.19
RNF40O75150 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
RNF40O75150 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC16.26■□□□□ 0.19
RNF40O75150 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
RNF40O75150 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.26■□□□□ 0.19
RNF40O75150 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.26■□□□□ 0.19
RNF40O75150 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.26■□□□□ 0.19
RNF40O75150 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
RNF40O75150 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.26■□□□□ 0.19
RNF40O75150 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.26■□□□□ 0.19
RNF40O75150 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
RNF40O75150 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.26■□□□□ 0.19
RNF40O75150 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
RNF40O75150 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.26■□□□□ 0.19
RNF40O75150 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
RNF40O75150 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
RNF40O75150 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 LINC01670-203ENST00000624859 977 ntTSL 3 BASIC16.26■□□□□ 0.19
RNF40O75150 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
RNF40O75150 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 AP001282.1-201ENST00000531301 1499 ntBASIC16.26■□□□□ 0.19
RNF40O75150 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC16.26■□□□□ 0.19
RNF40O75150 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC16.26■□□□□ 0.19
RNF40O75150 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC16.26■□□□□ 0.19
RNF40O75150 Z97205.2-201ENST00000564697 1639 ntBASIC16.26■□□□□ 0.19
RNF40O75150 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
RNF40O75150 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
RNF40O75150 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC16.26■□□□□ 0.19
RNF40O75150 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF40O75150 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
RNF40O75150 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC16.25■□□□□ 0.19
RNF40O75150 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
RNF40O75150 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.25■□□□□ 0.19
RNF40O75150 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
RNF40O75150 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC16.25■□□□□ 0.19
RNF40O75150 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
RNF40O75150 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 ANKRD19P-201ENST00000338192 862 ntBASIC16.25■□□□□ 0.19
RNF40O75150 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 BOLA2P3-201ENST00000404566 256 ntBASIC16.25■□□□□ 0.19
RNF40O75150 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 KRT43P-201ENST00000434019 910 ntBASIC16.25■□□□□ 0.19
RNF40O75150 RN7SL399P-201ENST00000471648 279 ntBASIC16.25■□□□□ 0.19
RNF40O75150 AC104989.1-201ENST00000519711 778 ntBASIC16.25■□□□□ 0.19
RNF40O75150 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
RNF40O75150 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.25■□□□□ 0.19
RNF40O75150 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.25■□□□□ 0.19
RNF40O75150 AC036164.1-201ENST00000570544 333 ntBASIC16.25■□□□□ 0.19
RNF40O75150 BTNL10-201ENST00000595971 695 ntBASIC16.25■□□□□ 0.19
RNF40O75150 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.25■□□□□ 0.19
RNF40O75150 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.25■□□□□ 0.19
RNF40O75150 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.25■□□□□ 0.19
RNF40O75150 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.25■□□□□ 0.19
RNF40O75150 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
RNF40O75150 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC16.25■□□□□ 0.19
RNF40O75150 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
RNF40O75150 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
RNF40O75150 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.25■□□□□ 0.19
RNF40O75150 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.25■□□□□ 0.19
RNF40O75150 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
RNF40O75150 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
RNF40O75150 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms