Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RPL35P9-201ENST00000446059 350 ntBASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 CHCHD2P2-201ENST00000503744 321 ntBASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 FAM90A21P-201ENST00000510875 1396 ntBASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 FAM90A15P-201ENST00000514465 1395 ntBASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 FAM90A6P-201ENST00000515148 1394 ntBASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 FAM90A16P-201ENST00000526662 1395 ntBASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 FAM90A9P-201ENST00000527940 1395 ntBASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 FAM90A5P-201ENST00000528738 1395 ntBASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 FAM90A14P-201ENST00000530386 1395 ntBASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 FAM90A13P-201ENST00000534703 1395 ntBASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 ZEB1-AS1-208ENST00000607166 2503 ntBASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 TREHP1-201ENST00000531328 465 ntBASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 AC008972.2-201ENST00000606587 494 ntBASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 RARS-210ENST00000626454 177 ntTSL 5 BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 AC018442.1-201ENST00000421439 2061 ntBASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK3Q9BYB0 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 AGAP7P-201ENST00000582299 2062 ntBASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 AGAP14-201ENST00000624701 2060 ntBASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 AL354702.1-201ENST00000442006 1960 ntBASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK3Q9BYB0 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 RN7SL494P-201ENST00000461517 304 ntBASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 AC006483.2-201ENST00000609813 515 ntBASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 ALG1L7P-201ENST00000502317 768 ntBASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 HPX-213ENST00000615166 826 ntTSL 5 BASIC18.66■□□□□ 0.58
SHANK3Q9BYB0 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms