Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 OARD1-212ENST00000482515 832 ntTSL 2 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 AC091804.1-201ENST00000486888 567 ntBASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 CD74-212ENST00000524315 584 ntTSL 5 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 NAT9-222ENST00000583476 583 ntTSL 3 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 AL118558.3-201ENST00000607414 1079 ntBASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 AL136295.7-201ENST00000619226 1200 ntBASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 AL162426.1-201ENST00000624141 743 ntBASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 AC244452.3-201ENST00000636814 210 ntBASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 AC018442.1-201ENST00000421439 2061 ntBASIC19.01■□□□□ 0.63
CHMP4AQ9BY43 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4AQ9BY43 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4AQ9BY43 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4AQ9BY43 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4AQ9BY43 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4AQ9BY43 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 SMS-201ENST00000379404 1174 ntTSL 3 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4AQ9BY43 AC103810.3-201ENST00000583567 96 ntBASIC19■□□□□ 0.63
CHMP4AQ9BY43 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 AC005324.6-201ENST00000587972 613 ntBASIC19■□□□□ 0.63
CHMP4AQ9BY43 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 ABBA01031663.1-201ENST00000635630 790 ntBASIC19■□□□□ 0.63
CHMP4AQ9BY43 AL136172.1-201ENST00000598590 1394 ntBASIC19■□□□□ 0.63
CHMP4AQ9BY43 F10-203ENST00000409306 1450 ntTSL 3 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4AQ9BY43 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4AQ9BY43 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 CASK-202ENST00000378158 3848 ntTSL 5 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4AQ9BY43 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP4AQ9BY43 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4AQ9BY43 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC19■□□□□ 0.63
CHMP4AQ9BY43 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 AC145098.2-201ENST00000623593 3026 ntBASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 ARTN-209ENST00000479128 471 ntTSL 3 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 RN7SL163P-201ENST00000583100 276 ntBASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 HARS-202ENST00000415192 1401 ntTSL 2 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC18.99■□□□□ 0.63
CHMP4AQ9BY43 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms