Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 FUCA1P1-201ENST00000374476 1351 ntBASIC14.36□□□□□ -0.11
VPS13AQ96RL7 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 AC139712.1-201ENST00000378256 1875 ntBASIC14.36□□□□□ -0.11
VPS13AQ96RL7 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 GNG10P1-201ENST00000452289 199 ntBASIC14.36□□□□□ -0.11
VPS13AQ96RL7 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 ZBED1P1-201ENST00000502364 1930 ntBASIC14.36□□□□□ -0.11
VPS13AQ96RL7 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 BRD7P5-201ENST00000299197 1822 ntBASIC14.36□□□□□ -0.11
VPS13AQ96RL7 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 LINC01101-201ENST00000622953 1884 ntBASIC14.36□□□□□ -0.11
VPS13AQ96RL7 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 OLA1P2-201ENST00000395519 1264 ntBASIC14.36□□□□□ -0.11
VPS13AQ96RL7 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 AC098934.1-203ENST00000442868 1262 ntBASIC14.36□□□□□ -0.11
VPS13AQ96RL7 ERP29P1-201ENST00000442902 706 ntBASIC14.36□□□□□ -0.11
VPS13AQ96RL7 COX5A-205ENST00000568517 582 ntTSL 3 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS13AQ96RL7 AL590440.2-201ENST00000641973 1595 ntBASIC14.36□□□□□ -0.11
VPS13AQ96RL7 AL603832.2-201ENST00000566195 2125 ntBASIC14.36□□□□□ -0.11
VPS13AQ96RL7 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 AC006372.4-201ENST00000624122 1543 ntBASIC14.35□□□□□ -0.11
VPS13AQ96RL7 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 AC023968.2-201ENST00000560593 1049 ntBASIC14.35□□□□□ -0.11
VPS13AQ96RL7 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 AC027612.2-202ENST00000445955 1199 ntBASIC14.35□□□□□ -0.11
VPS13AQ96RL7 VENTXP4-201ENST00000449029 958 ntBASIC14.35□□□□□ -0.11
VPS13AQ96RL7 RN7SL288P-201ENST00000490496 291 ntBASIC14.35□□□□□ -0.11
VPS13AQ96RL7 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 SIGLEC20P-201ENST00000595243 1311 ntBASIC14.35□□□□□ -0.11
VPS13AQ96RL7 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VPS13AQ96RL7 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 CFL1P6-201ENST00000400899 494 ntBASIC14.34□□□□□ -0.11
VPS13AQ96RL7 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 CELP-201ENST00000411440 1249 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 TLE1P1-201ENST00000422965 589 ntBASIC14.34□□□□□ -0.11
VPS13AQ96RL7 RN7SL23P-201ENST00000484055 275 ntBASIC14.34□□□□□ -0.11
VPS13AQ96RL7 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 EEF1DP7-201ENST00000580496 513 ntBASIC14.34□□□□□ -0.11
VPS13AQ96RL7 AC021321.1-201ENST00000607397 1113 ntBASIC14.34□□□□□ -0.11
VPS13AQ96RL7 AP006248.1-201ENST00000610471 67 ntBASIC14.34□□□□□ -0.11
VPS13AQ96RL7 MIR6893-201ENST00000613458 69 ntBASIC14.34□□□□□ -0.11
VPS13AQ96RL7 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
VPS13AQ96RL7 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms