Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 AC244669.2-201ENST00000612320 853 ntBASIC11.58□□□□□ -0.56
CCDC140Q96MF4 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC11.58□□□□□ -0.56
CCDC140Q96MF4 AC132938.4-201ENST00000623835 848 ntBASIC11.58□□□□□ -0.56
CCDC140Q96MF4 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 AC006387.1-201ENST00000626365 671 ntTSL 5 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC11.58□□□□□ -0.56
CCDC140Q96MF4 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 AC020910.5-201ENST00000623668 1865 ntBASIC11.57□□□□□ -0.56
CCDC140Q96MF4 INE2-201ENST00000630399 1874 ntBASIC11.57□□□□□ -0.56
CCDC140Q96MF4 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 AC139749.1-202ENST00000617529 3139 ntBASIC11.57□□□□□ -0.56
CCDC140Q96MF4 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 FAM197Y7-201ENST00000432892 766 ntBASIC11.57□□□□□ -0.56
CCDC140Q96MF4 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 FTLP10-202ENST00000505798 471 ntBASIC11.57□□□□□ -0.56
CCDC140Q96MF4 AC022447.6-201ENST00000515522 438 ntBASIC11.57□□□□□ -0.56
CCDC140Q96MF4 RNA5SP486-201ENST00000515961 83 ntBASIC11.57□□□□□ -0.56
CCDC140Q96MF4 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 CR383656.12-201ENST00000549567 513 ntBASIC11.57□□□□□ -0.56
CCDC140Q96MF4 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 FKBP4P6-201ENST00000457486 1332 ntBASIC11.57□□□□□ -0.56
CCDC140Q96MF4 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms