Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 AC091951.1-201ENST00000512854 2465 ntBASIC15.31■□□□□ 0.04
CHD9Q3L8U1 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 FBXO36P1-201ENST00000579006 471 ntBASIC15.31■□□□□ 0.04
CHD9Q3L8U1 PRMT1P1-201ENST00000604252 1009 ntBASIC15.31■□□□□ 0.04
CHD9Q3L8U1 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 WASH7P-201ENST00000488147 1351 ntBASIC15.31■□□□□ 0.04
CHD9Q3L8U1 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.31■□□□□ 0.04
CHD9Q3L8U1 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 HNRNPA1P2-207ENST00000432375 960 ntBASIC15.3■□□□□ 0.04
CHD9Q3L8U1 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 MROH4P-201ENST00000431302 1578 ntBASIC15.3■□□□□ 0.04
CHD9Q3L8U1 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 KLF17P1-201ENST00000547105 1126 ntBASIC15.3■□□□□ 0.04
CHD9Q3L8U1 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 AC026471.1-201ENST00000564629 3026 ntBASIC15.3■□□□□ 0.04
CHD9Q3L8U1 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 OR51A9P-201ENST00000422578 911 ntBASIC15.3■□□□□ 0.04
CHD9Q3L8U1 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 AC010900.1-201ENST00000449849 1296 ntBASIC15.3■□□□□ 0.04
CHD9Q3L8U1 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC15.3■□□□□ 0.04
CHD9Q3L8U1 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 HINT1-205ENST00000508488 703 ntTSL 2 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 APOC1-209ENST00000592885 562 ntTSL 3 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 AC080013.5-201ENST00000607044 679 ntBASIC15.29■□□□□ 0.04
CHD9Q3L8U1 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 VENTXP4-201ENST00000449029 958 ntBASIC15.29■□□□□ 0.04
CHD9Q3L8U1 RN7SL147P-201ENST00000487345 298 ntBASIC15.29■□□□□ 0.04
CHD9Q3L8U1 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CHD9Q3L8U1 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms