Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LMO4P61968 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC12.17□□□□□ -0.46
LMO4P61968 AL590440.2-201ENST00000641973 1595 ntBASIC12.17□□□□□ -0.46
LMO4P61968 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC12.17□□□□□ -0.46
LMO4P61968 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC12.17□□□□□ -0.46
LMO4P61968 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
LMO4P61968 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC12.17□□□□□ -0.46
LMO4P61968 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
LMO4P61968 FAS-202ENST00000352159 1722 ntTSL 5 BASIC12.17□□□□□ -0.46
LMO4P61968 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LMO4P61968 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
LMO4P61968 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
LMO4P61968 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC12.17□□□□□ -0.46
LMO4P61968 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC12.16□□□□□ -0.46
LMO4P61968 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
LMO4P61968 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
LMO4P61968 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC12.16□□□□□ -0.46
LMO4P61968 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC12.16□□□□□ -0.46
LMO4P61968 RAN-210ENST00000541630 1475 ntTSL 2 BASIC12.16□□□□□ -0.46
LMO4P61968 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC12.16□□□□□ -0.46
LMO4P61968 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC12.16□□□□□ -0.46
LMO4P61968 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 PARVG-202ENST00000415224 999 ntTSL 2 BASIC12.16□□□□□ -0.46
LMO4P61968 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 AC073150.1-201ENST00000450406 1084 ntBASIC12.16□□□□□ -0.46
LMO4P61968 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC12.16□□□□□ -0.46
LMO4P61968 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC12.16□□□□□ -0.46
LMO4P61968 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC12.16□□□□□ -0.46
LMO4P61968 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC12.16□□□□□ -0.46
LMO4P61968 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC12.16□□□□□ -0.46
LMO4P61968 IRF3-215ENST00000596822 823 ntTSL 3 BASIC12.16□□□□□ -0.46
LMO4P61968 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC12.16□□□□□ -0.46
LMO4P61968 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
LMO4P61968 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC12.16□□□□□ -0.46
LMO4P61968 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC12.16□□□□□ -0.46
LMO4P61968 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
LMO4P61968 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC12.16□□□□□ -0.46
LMO4P61968 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 R3HDM2P2-201ENST00000401880 2116 ntBASIC12.16□□□□□ -0.46
LMO4P61968 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LMO4P61968 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
LMO4P61968 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 AGAP7P-201ENST00000582299 2062 ntBASIC12.15□□□□□ -0.46
LMO4P61968 AGAP14-201ENST00000624701 2060 ntBASIC12.15□□□□□ -0.46
LMO4P61968 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
LMO4P61968 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
LMO4P61968 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
LMO4P61968 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC12.15□□□□□ -0.46
LMO4P61968 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 AC009093.10-201ENST00000641956 1442 ntBASIC12.15□□□□□ -0.46
LMO4P61968 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.46
LMO4P61968 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 CASK-202ENST00000378158 3848 ntTSL 5 BASIC12.15□□□□□ -0.46
LMO4P61968 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LMO4P61968 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
LMO4P61968 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
LMO4P61968 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC12.15□□□□□ -0.46
LMO4P61968 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC12.15□□□□□ -0.46
LMO4P61968 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC12.15□□□□□ -0.46
LMO4P61968 XBP1P1-201ENST00000436573 652 ntBASIC12.15□□□□□ -0.46
LMO4P61968 EEF1DP6-201ENST00000449232 372 ntBASIC12.15□□□□□ -0.46
LMO4P61968 AC234782.1-201ENST00000451950 919 ntBASIC12.15□□□□□ -0.46
LMO4P61968 AC116345.2-201ENST00000512837 523 ntBASIC12.15□□□□□ -0.46
LMO4P61968 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC12.15□□□□□ -0.46
LMO4P61968 POU5F1P2-201ENST00000521750 823 ntBASIC12.15□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms