Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC18.15■□□□□ 0.5
NUP98P52948 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
NUP98P52948 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 AC007952.4-201ENST00000573866 637 ntBASIC18.15■□□□□ 0.5
NUP98P52948 AC067931.2-201ENST00000623655 2003 ntBASIC18.15■□□□□ 0.5
NUP98P52948 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.15■□□□□ 0.5
NUP98P52948 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
NUP98P52948 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
NUP98P52948 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
NUP98P52948 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC18.15■□□□□ 0.5
NUP98P52948 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC18.15■□□□□ 0.5
NUP98P52948 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NUP98P52948 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.15■□□□□ 0.5
NUP98P52948 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
NUP98P52948 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
NUP98P52948 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
NUP98P52948 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC18.14■□□□□ 0.5
NUP98P52948 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
NUP98P52948 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC18.14■□□□□ 0.5
NUP98P52948 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
NUP98P52948 AC004837.1-201ENST00000446267 564 ntBASIC18.14■□□□□ 0.5
NUP98P52948 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC18.14■□□□□ 0.5
NUP98P52948 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC18.14■□□□□ 0.5
NUP98P52948 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC18.14■□□□□ 0.5
NUP98P52948 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC18.14■□□□□ 0.5
NUP98P52948 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUP98P52948 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.14■□□□□ 0.49
NUP98P52948 AC018529.2-202ENST00000611482 3087 ntBASIC18.14■□□□□ 0.49
NUP98P52948 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUP98P52948 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NUP98P52948 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
NUP98P52948 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NUP98P52948 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUP98P52948 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUP98P52948 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC18.14■□□□□ 0.49
NUP98P52948 API5-208ENST00000531273 1868 ntTSL 2 BASIC18.14■□□□□ 0.49
NUP98P52948 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUP98P52948 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUP98P52948 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC18.14■□□□□ 0.49
NUP98P52948 AC018463.1-201ENST00000456674 917 ntBASIC18.14■□□□□ 0.49
NUP98P52948 RNA5SP417-201ENST00000516459 108 ntBASIC18.14■□□□□ 0.49
NUP98P52948 MIR5196-201ENST00000578146 115 ntBASIC18.14■□□□□ 0.49
NUP98P52948 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC18.14■□□□□ 0.49
NUP98P52948 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC18.14■□□□□ 0.49
NUP98P52948 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC18.14■□□□□ 0.49
NUP98P52948 AC021016.3-201ENST00000608367 477 ntBASIC18.14■□□□□ 0.49
NUP98P52948 AL132780.4-201ENST00000624870 1135 ntBASIC18.14■□□□□ 0.49
NUP98P52948 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC18.14■□□□□ 0.49
NUP98P52948 TCAF2P1-201ENST00000291129 2421 ntBASIC18.13■□□□□ 0.49
NUP98P52948 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC18.13■□□□□ 0.49
NUP98P52948 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NUP98P52948 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NUP98P52948 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC18.13■□□□□ 0.49
NUP98P52948 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC18.13■□□□□ 0.49
NUP98P52948 AGGF1P1-201ENST00000509500 2073 ntBASIC18.13■□□□□ 0.49
NUP98P52948 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
NUP98P52948 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC18.13■□□□□ 0.49
NUP98P52948 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
NUP98P52948 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC18.13■□□□□ 0.49
NUP98P52948 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NUP98P52948 ERP29P1-201ENST00000442902 706 ntBASIC18.13■□□□□ 0.49
NUP98P52948 DPY19L2P5-201ENST00000456300 331 ntBASIC18.13■□□□□ 0.49
NUP98P52948 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC18.13■□□□□ 0.49
NUP98P52948 RN7SL530P-201ENST00000485097 298 ntBASIC18.13■□□□□ 0.49
NUP98P52948 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NUP98P52948 CMC2-204ENST00000562713 573 ntTSL 3 BASIC18.13■□□□□ 0.49
NUP98P52948 CMC2-209ENST00000565108 399 ntTSL 2 BASIC18.13■□□□□ 0.49
NUP98P52948 TP53-221ENST00000615910 1149 ntTSL 5 BASIC18.13■□□□□ 0.49
NUP98P52948 AC105137.3-201ENST00000617588 984 ntBASIC18.13■□□□□ 0.49
NUP98P52948 HLA-C-210ENST00000640219 976 ntBASIC18.13■□□□□ 0.49
NUP98P52948 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NUP98P52948 AC023157.3-201ENST00000619086 2088 ntBASIC18.13■□□□□ 0.49
NUP98P52948 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
NUP98P52948 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NUP98P52948 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NUP98P52948 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
NUP98P52948 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
NUP98P52948 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NUP98P52948 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC18.13■□□□□ 0.49
NUP98P52948 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.12■□□□□ 0.49
NUP98P52948 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 AC097065.1-201ENST00000425737 517 ntBASIC18.12■□□□□ 0.49
NUP98P52948 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 LYPLA2P1-203ENST00000447689 696 ntBASIC18.12■□□□□ 0.49
NUP98P52948 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC18.12■□□□□ 0.49
NUP98P52948 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms