Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.04■□□□□ -0
VCANP13611 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC15.04■□□□□ -0
VCANP13611 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC15.04■□□□□ -0
VCANP13611 CD164-210ENST00000512821 964 ntTSL 2 BASIC15.04■□□□□ -0
VCANP13611 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC15.04■□□□□ -0
VCANP13611 AC091304.3-201ENST00000566500 716 ntBASIC15.04■□□□□ -0
VCANP13611 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC15.04■□□□□ -0
VCANP13611 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.04■□□□□ -0
VCANP13611 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VCANP13611 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
VCANP13611 AD000864.1-201ENST00000624076 2295 ntBASIC15.04■□□□□ -0
VCANP13611 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
VCANP13611 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VCANP13611 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.04■□□□□ -0
VCANP13611 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VCANP13611 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
VCANP13611 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.04■□□□□ -0
VCANP13611 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VCANP13611 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
VCANP13611 AC093106.1-201ENST00000437271 352 ntBASIC15.04■□□□□ -0
VCANP13611 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC15.04■□□□□ -0
VCANP13611 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VCANP13611 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
VCANP13611 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
VCANP13611 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.04■□□□□ -0
VCANP13611 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.04■□□□□ -0
VCANP13611 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC15.03■□□□□ -0
VCANP13611 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC15.03■□□□□ -0
VCANP13611 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.03■□□□□ -0
VCANP13611 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC15.03■□□□□ -0
VCANP13611 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC15.03■□□□□ -0
VCANP13611 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.03■□□□□ -0
VCANP13611 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC15.03■□□□□ -0
VCANP13611 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC15.03■□□□□ -0
VCANP13611 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC15.03■□□□□ -0
VCANP13611 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC15.03■□□□□ -0
VCANP13611 TMBIM7P-202ENST00000641474 1516 ntBASIC15.03■□□□□ -0
VCANP13611 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.03■□□□□ -0
VCANP13611 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.03■□□□□ -0
VCANP13611 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.03■□□□□ -0
VCANP13611 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC15.03■□□□□ -0
VCANP13611 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.03■□□□□ -0
VCANP13611 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC15.03■□□□□ -0
VCANP13611 RN7SL87P-201ENST00000497657 288 ntBASIC15.03■□□□□ -0
VCANP13611 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 AC007728.1-202ENST00000564510 787 ntTSL 3 BASIC15.03■□□□□ -0
VCANP13611 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC15.03■□□□□ -0
VCANP13611 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC15.03■□□□□ -0
VCANP13611 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC15.03■□□□□ -0
VCANP13611 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
VCANP13611 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.03■□□□□ -0
VCANP13611 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.03■□□□□ -0
VCANP13611 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 GUCY2EP-203ENST00000531117 1918 ntBASIC15.03■□□□□ -0
VCANP13611 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
VCANP13611 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
VCANP13611 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC15.02■□□□□ -0
VCANP13611 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.02■□□□□ -0
VCANP13611 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
VCANP13611 STX3-207ENST00000633708 3111 ntTSL 5 BASIC15.02■□□□□ -0
VCANP13611 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
VCANP13611 RN7SL564P-201ENST00000496309 250 ntBASIC15.02■□□□□ -0
VCANP13611 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC15.02■□□□□ -0
VCANP13611 HNRNPA1P5-201ENST00000558213 966 ntBASIC15.02■□□□□ -0
VCANP13611 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
VCANP13611 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.02■□□□□ -0
VCANP13611 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VCANP13611 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
VCANP13611 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.02■□□□□ -0
VCANP13611 CICP6-201ENST00000457191 2729 ntBASIC15.02■□□□□ -0
VCANP13611 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VCANP13611 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VCANP13611 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.02■□□□□ -0
VCANP13611 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC15.02■□□□□ -0
VCANP13611 KRT127P-201ENST00000547183 433 ntBASIC15.02■□□□□ -0
VCANP13611 RN7SL665P-201ENST00000578793 300 ntBASIC15.02■□□□□ -0
VCANP13611 BCAS4-206ENST00000609336 787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
VCANP13611 AC093495.1-215ENST00000626655 821 ntTSL 5 BASIC15.02■□□□□ -0
VCANP13611 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
VCANP13611 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VCANP13611 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VCANP13611 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
VCANP13611 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.02□□□□□ -0.01
VCANP13611 AL590440.2-201ENST00000641973 1595 ntBASIC15.02□□□□□ -0.01
VCANP13611 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VCANP13611 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.02□□□□□ -0.01
VCANP13611 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.02□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms