Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A1P12109 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A1P12109 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A1P12109 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A1P12109 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC16.29■□□□□ 0.2
COL6A1P12109 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC16.29■□□□□ 0.2
COL6A1P12109 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC16.29■□□□□ 0.2
COL6A1P12109 GCOM2-201ENST00000509133 1104 ntBASIC16.29■□□□□ 0.2
COL6A1P12109 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC16.29■□□□□ 0.2
COL6A1P12109 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.29■□□□□ 0.2
COL6A1P12109 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A1P12109 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC16.29■□□□□ 0.2
COL6A1P12109 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL6A1P12109 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
COL6A1P12109 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A1P12109 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC16.29■□□□□ 0.2
COL6A1P12109 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A1P12109 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A1P12109 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
COL6A1P12109 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
COL6A1P12109 TMBIM7P-202ENST00000641474 1516 ntBASIC16.29■□□□□ 0.2
COL6A1P12109 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
COL6A1P12109 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A1P12109 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
COL6A1P12109 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A1P12109 CICP11-201ENST00000434745 2827 ntBASIC16.28■□□□□ 0.2
COL6A1P12109 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
COL6A1P12109 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
COL6A1P12109 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A1P12109 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 AC090616.6-203ENST00000579186 1945 ntBASIC16.28■□□□□ 0.2
COL6A1P12109 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.28■□□□□ 0.2
COL6A1P12109 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC16.28■□□□□ 0.2
COL6A1P12109 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A1P12109 DUX4L50-201ENST00000455245 715 ntBASIC16.28■□□□□ 0.2
COL6A1P12109 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC16.28■□□□□ 0.2
COL6A1P12109 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A1P12109 RNA5SP417-201ENST00000516459 108 ntBASIC16.28■□□□□ 0.2
COL6A1P12109 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC16.28■□□□□ 0.2
COL6A1P12109 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
COL6A1P12109 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
COL6A1P12109 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC16.28■□□□□ 0.2
COL6A1P12109 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A1P12109 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.28■□□□□ 0.2
COL6A1P12109 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A1P12109 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
COL6A1P12109 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A1P12109 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.27■□□□□ 0.2
COL6A1P12109 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A1P12109 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A1P12109 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A1P12109 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A1P12109 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A1P12109 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
COL6A1P12109 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A1P12109 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.27■□□□□ 0.2
COL6A1P12109 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.27■□□□□ 0.2
COL6A1P12109 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A1P12109 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A1P12109 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A1P12109 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.27■□□□□ 0.2
COL6A1P12109 ACTBP7-201ENST00000418351 1124 ntBASIC16.27■□□□□ 0.2
COL6A1P12109 KRT17P4-201ENST00000429445 819 ntBASIC16.27■□□□□ 0.2
COL6A1P12109 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC16.27■□□□□ 0.2
COL6A1P12109 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC16.27■□□□□ 0.2
COL6A1P12109 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC16.27■□□□□ 0.2
COL6A1P12109 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL6A1P12109 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC16.27■□□□□ 0.2
COL6A1P12109 RPS23-204ENST00000507980 836 ntTSL 2 BASIC16.27■□□□□ 0.2
COL6A1P12109 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC16.27■□□□□ 0.2
COL6A1P12109 AC131206.1-201ENST00000538078 1211 ntBASIC16.27■□□□□ 0.2
COL6A1P12109 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC16.27■□□□□ 0.2
COL6A1P12109 AC003686.1-201ENST00000550956 1034 ntBASIC16.27■□□□□ 0.2
COL6A1P12109 AC007952.4-201ENST00000573866 637 ntBASIC16.27■□□□□ 0.2
COL6A1P12109 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
COL6A1P12109 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC16.27■□□□□ 0.2
COL6A1P12109 AL022334.2-201ENST00000610000 484 ntBASIC16.27■□□□□ 0.2
COL6A1P12109 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC16.27■□□□□ 0.2
COL6A1P12109 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL6A1P12109 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A1P12109 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms