Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
ABCA1O95477 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 AC091951.1-201ENST00000512854 2465 ntBASIC12.62□□□□□ -0.39
ABCA1O95477 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
ABCA1O95477 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC12.62□□□□□ -0.39
ABCA1O95477 B9D1-203ENST00000395615 805 ntTSL 3 BASIC12.62□□□□□ -0.39
ABCA1O95477 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC12.62□□□□□ -0.39
ABCA1O95477 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC12.62□□□□□ -0.39
ABCA1O95477 ATP6V0CP2-201ENST00000469409 207 ntBASIC12.62□□□□□ -0.39
ABCA1O95477 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC12.62□□□□□ -0.39
ABCA1O95477 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC12.62□□□□□ -0.39
ABCA1O95477 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC12.62□□□□□ -0.39
ABCA1O95477 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC12.62□□□□□ -0.39
ABCA1O95477 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 TUBBP5-203ENST00000508529 1334 ntBASIC12.61□□□□□ -0.39
ABCA1O95477 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA1O95477 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC12.61□□□□□ -0.39
ABCA1O95477 AC011477.6-201ENST00000604980 1927 ntBASIC12.61□□□□□ -0.39
ABCA1O95477 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA1O95477 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA1O95477 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12.61□□□□□ -0.39
ABCA1O95477 SSR4P1-203ENST00000599569 2260 ntBASIC12.61□□□□□ -0.39
ABCA1O95477 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC12.61□□□□□ -0.39
ABCA1O95477 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC12.61□□□□□ -0.39
ABCA1O95477 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC12.61□□□□□ -0.39
ABCA1O95477 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA1O95477 AC026740.1-201ENST00000607068 791 ntBASIC12.61□□□□□ -0.39
ABCA1O95477 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC12.61□□□□□ -0.39
ABCA1O95477 AC090616.6-203ENST00000579186 1945 ntBASIC12.61□□□□□ -0.39
ABCA1O95477 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA1O95477 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 COCH-203ENST00000460581 2688 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA1O95477 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA1O95477 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC12.61□□□□□ -0.39
ABCA1O95477 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
ABCA1O95477 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
ABCA1O95477 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA1O95477 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA1O95477 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
ABCA1O95477 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC12.6□□□□□ -0.39
ABCA1O95477 GHSR-202ENST00000427970 912 ntBASIC12.6□□□□□ -0.39
ABCA1O95477 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC12.6□□□□□ -0.39
ABCA1O95477 AC069218.1-201ENST00000435269 762 ntBASIC12.6□□□□□ -0.39
ABCA1O95477 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
ABCA1O95477 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA1O95477 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC12.6□□□□□ -0.39
ABCA1O95477 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC12.6□□□□□ -0.39
ABCA1O95477 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC12.6□□□□□ -0.39
ABCA1O95477 AC244157.2-201ENST00000616239 1006 ntBASIC12.6□□□□□ -0.39
ABCA1O95477 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
ABCA1O95477 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA1O95477 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC12.6□□□□□ -0.39
ABCA1O95477 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA1O95477 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
ABCA1O95477 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
ABCA1O95477 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA1O95477 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.6□□□□□ -0.39
ABCA1O95477 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA1O95477 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC12.6□□□□□ -0.39
ABCA1O95477 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 DEF8-202ENST00000418391 852 ntTSL 2 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms