Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.34□□□□□ -0.27
MMP28Q9H239 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.34□□□□□ -0.27
MMP28Q9H239 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
MMP28Q9H239 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
MMP28Q9H239 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
MMP28Q9H239 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
MMP28Q9H239 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.27
MMP28Q9H239 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
MMP28Q9H239 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
MMP28Q9H239 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.27
MMP28Q9H239 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
MMP28Q9H239 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
MMP28Q9H239 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
MMP28Q9H239 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.33□□□□□ -0.27
MMP28Q9H239 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
MMP28Q9H239 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.33□□□□□ -0.28
MMP28Q9H239 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
MMP28Q9H239 AC131212.3-201ENST00000624087 4219 ntBASIC13.33□□□□□ -0.28
MMP28Q9H239 AC114271.1-201ENST00000612689 2813 ntBASIC13.33□□□□□ -0.28
MMP28Q9H239 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
MMP28Q9H239 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
MMP28Q9H239 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC13.33□□□□□ -0.28
MMP28Q9H239 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
MMP28Q9H239 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.28
MMP28Q9H239 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
MMP28Q9H239 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
MMP28Q9H239 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
MMP28Q9H239 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC13.33□□□□□ -0.28
MMP28Q9H239 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
MMP28Q9H239 AC079140.1-201ENST00000508039 487 ntBASIC13.33□□□□□ -0.28
MMP28Q9H239 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC13.33□□□□□ -0.28
MMP28Q9H239 PUS1-205ENST00000535067 838 ntTSL 3 BASIC13.33□□□□□ -0.28
MMP28Q9H239 RNF34-208ENST00000555076 593 ntTSL 3 BASIC13.33□□□□□ -0.28
MMP28Q9H239 AC243562.1-201ENST00000560672 389 ntBASIC13.33□□□□□ -0.28
MMP28Q9H239 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.33□□□□□ -0.28
MMP28Q9H239 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC13.33□□□□□ -0.28
MMP28Q9H239 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC13.33□□□□□ -0.28
MMP28Q9H239 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
MMP28Q9H239 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC13.33□□□□□ -0.28
MMP28Q9H239 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC13.33□□□□□ -0.28
MMP28Q9H239 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC13.33□□□□□ -0.28
MMP28Q9H239 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
MMP28Q9H239 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
MMP28Q9H239 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
MMP28Q9H239 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
MMP28Q9H239 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
MMP28Q9H239 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
MMP28Q9H239 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
MMP28Q9H239 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.33□□□□□ -0.28
MMP28Q9H239 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
MMP28Q9H239 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
MMP28Q9H239 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.33□□□□□ -0.28
MMP28Q9H239 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
MMP28Q9H239 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC13.33□□□□□ -0.28
MMP28Q9H239 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
MMP28Q9H239 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.33□□□□□ -0.28
MMP28Q9H239 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC13.33□□□□□ -0.28
MMP28Q9H239 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
MMP28Q9H239 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.32□□□□□ -0.28
MMP28Q9H239 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
MMP28Q9H239 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.32□□□□□ -0.28
MMP28Q9H239 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC13.32□□□□□ -0.28
MMP28Q9H239 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.32□□□□□ -0.28
MMP28Q9H239 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.32□□□□□ -0.28
MMP28Q9H239 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC13.32□□□□□ -0.28
MMP28Q9H239 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC13.32□□□□□ -0.28
MMP28Q9H239 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC13.32□□□□□ -0.28
MMP28Q9H239 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
MMP28Q9H239 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC13.32□□□□□ -0.28
MMP28Q9H239 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
MMP28Q9H239 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
MMP28Q9H239 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
MMP28Q9H239 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC13.32□□□□□ -0.28
MMP28Q9H239 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC13.32□□□□□ -0.28
MMP28Q9H239 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC13.32□□□□□ -0.28
MMP28Q9H239 KRT8P48-201ENST00000515599 1220 ntBASIC13.32□□□□□ -0.28
MMP28Q9H239 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC13.32□□□□□ -0.28
MMP28Q9H239 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC13.32□□□□□ -0.28
MMP28Q9H239 KRT8P23-201ENST00000560090 1207 ntBASIC13.32□□□□□ -0.28
MMP28Q9H239 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC13.32□□□□□ -0.28
MMP28Q9H239 AL138918.1-201ENST00000568306 659 ntBASIC13.32□□□□□ -0.28
MMP28Q9H239 MIR497HG-202ENST00000572453 3838 ntBASIC13.32□□□□□ -0.28
MMP28Q9H239 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC13.32□□□□□ -0.28
MMP28Q9H239 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.32□□□□□ -0.28
MMP28Q9H239 FHL2-212ENST00000607522 759 ntTSL 2 BASIC13.32□□□□□ -0.28
MMP28Q9H239 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC13.32□□□□□ -0.28
MMP28Q9H239 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms