Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC12.75□□□□□ -0.37
COL12A1Q99715 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC12.75□□□□□ -0.37
COL12A1Q99715 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC12.75□□□□□ -0.37
COL12A1Q99715 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 KRT18P37-201ENST00000520711 1282 ntBASIC12.75□□□□□ -0.37
COL12A1Q99715 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC12.75□□□□□ -0.37
COL12A1Q99715 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.75□□□□□ -0.37
COL12A1Q99715 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC12.75□□□□□ -0.37
COL12A1Q99715 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC12.75□□□□□ -0.37
COL12A1Q99715 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 RNVU1-8-201ENST00000364272 125 ntBASIC12.75□□□□□ -0.37
COL12A1Q99715 GNG10P1-201ENST00000452289 199 ntBASIC12.75□□□□□ -0.37
COL12A1Q99715 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC12.75□□□□□ -0.37
COL12A1Q99715 CRYAB-213ENST00000533475 1119 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
COL12A1Q99715 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC12.75□□□□□ -0.37
COL12A1Q99715 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 AC127383.1-201ENST00000444697 1800 ntBASIC12.74□□□□□ -0.37
COL12A1Q99715 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.74□□□□□ -0.37
COL12A1Q99715 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 MIR648-201ENST00000385046 94 ntBASIC12.74□□□□□ -0.37
COL12A1Q99715 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC12.74□□□□□ -0.37
COL12A1Q99715 RNA5SP406-201ENST00000516106 112 ntBASIC12.74□□□□□ -0.37
COL12A1Q99715 AC078814.4-201ENST00000546650 327 ntBASIC12.74□□□□□ -0.37
COL12A1Q99715 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC12.74□□□□□ -0.37
COL12A1Q99715 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC12.74□□□□□ -0.37
COL12A1Q99715 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC12.74□□□□□ -0.37
COL12A1Q99715 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC12.74□□□□□ -0.37
COL12A1Q99715 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC12.74□□□□□ -0.37
COL12A1Q99715 NKILA-202ENST00000614771 2598 ntBASIC12.74□□□□□ -0.37
COL12A1Q99715 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
COL12A1Q99715 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC12.74□□□□□ -0.37
COL12A1Q99715 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
COL12A1Q99715 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
COL12A1Q99715 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC12.74□□□□□ -0.37
COL12A1Q99715 RGS5-216ENST00000449680 788 ntTSL 3 BASIC12.74□□□□□ -0.37
COL12A1Q99715 AC018638.5-201ENST00000450885 754 ntBASIC12.74□□□□□ -0.37
COL12A1Q99715 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
COL12A1Q99715 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
COL12A1Q99715 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
COL12A1Q99715 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC12.74□□□□□ -0.37
COL12A1Q99715 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC12.74□□□□□ -0.37
COL12A1Q99715 AC024909.3-201ENST00000611513 2257 ntBASIC12.74□□□□□ -0.37
COL12A1Q99715 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL12A1Q99715 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC12.73□□□□□ -0.37
COL12A1Q99715 AC069224.1-201ENST00000566372 1715 ntBASIC12.73□□□□□ -0.37
COL12A1Q99715 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 HLA-DMA-202ENST00000395303 1007 ntBASIC12.73□□□□□ -0.37
COL12A1Q99715 THAP4-203ENST00000402545 833 ntTSL 5 BASIC12.73□□□□□ -0.37
COL12A1Q99715 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
COL12A1Q99715 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC12.73□□□□□ -0.37
COL12A1Q99715 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC12.73□□□□□ -0.37
COL12A1Q99715 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC12.73□□□□□ -0.37
COL12A1Q99715 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC12.73□□□□□ -0.37
COL12A1Q99715 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 AC105250.1-201ENST00000509378 2057 ntBASIC12.73□□□□□ -0.37
COL12A1Q99715 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC12.73□□□□□ -0.37
COL12A1Q99715 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL12A1Q99715 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms