Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC133539.2-201ENST00000604757 467 ntBASIC17.12■□□□□ 0.33
USP28Q96RU2 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP28Q96RU2 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
USP28Q96RU2 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.12■□□□□ 0.33
USP28Q96RU2 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
USP28Q96RU2 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP28Q96RU2 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC17.12■□□□□ 0.33
USP28Q96RU2 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP28Q96RU2 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP28Q96RU2 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
USP28Q96RU2 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC17.11■□□□□ 0.33
USP28Q96RU2 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 LRRC59-203ENST00000576448 1531 ntBASIC17.11■□□□□ 0.33
USP28Q96RU2 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 CNTNAP3P2-201ENST00000617175 3861 ntBASIC17.11■□□□□ 0.33
USP28Q96RU2 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC17.11■□□□□ 0.33
USP28Q96RU2 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC17.11■□□□□ 0.33
USP28Q96RU2 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.11■□□□□ 0.33
USP28Q96RU2 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.11■□□□□ 0.33
USP28Q96RU2 AC007969.1-201ENST00000433675 447 ntBASIC17.11■□□□□ 0.33
USP28Q96RU2 TSPY16P-201ENST00000449843 468 ntBASIC17.11■□□□□ 0.33
USP28Q96RU2 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.11■□□□□ 0.33
USP28Q96RU2 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.11■□□□□ 0.33
USP28Q96RU2 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.11■□□□□ 0.33
USP28Q96RU2 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.11■□□□□ 0.33
USP28Q96RU2 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.11■□□□□ 0.33
USP28Q96RU2 AL603764.1-201ENST00000636452 321 ntBASIC17.11■□□□□ 0.33
USP28Q96RU2 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
USP28Q96RU2 AL391825.1-201ENST00000457671 1364 ntBASIC17.11■□□□□ 0.33
USP28Q96RU2 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
USP28Q96RU2 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP28Q96RU2 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
USP28Q96RU2 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 AC090505.1-201ENST00000430515 1834 ntBASIC17.1■□□□□ 0.33
USP28Q96RU2 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC17.1■□□□□ 0.33
USP28Q96RU2 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
USP28Q96RU2 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
USP28Q96RU2 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC17.1■□□□□ 0.33
USP28Q96RU2 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
USP28Q96RU2 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
USP28Q96RU2 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.1■□□□□ 0.33
USP28Q96RU2 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.1■□□□□ 0.33
USP28Q96RU2 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
USP28Q96RU2 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.1■□□□□ 0.33
USP28Q96RU2 WASH4P-201ENST00000564273 1246 ntBASIC17.1■□□□□ 0.33
USP28Q96RU2 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC17.1■□□□□ 0.33
USP28Q96RU2 AC092364.2-202ENST00000597012 1073 ntBASIC17.1■□□□□ 0.33
USP28Q96RU2 AJ011932.1-201ENST00000621707 465 ntBASIC17.1■□□□□ 0.33
USP28Q96RU2 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC17.1■□□□□ 0.33
USP28Q96RU2 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
USP28Q96RU2 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
USP28Q96RU2 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC17.1■□□□□ 0.33
USP28Q96RU2 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC17.1■□□□□ 0.33
USP28Q96RU2 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC17.1■□□□□ 0.33
USP28Q96RU2 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
USP28Q96RU2 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP28Q96RU2 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC17.1■□□□□ 0.33
USP28Q96RU2 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
USP28Q96RU2 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC17.09■□□□□ 0.33
USP28Q96RU2 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
USP28Q96RU2 AC016397.2-201ENST00000624848 1985 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms