Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC12.89□□□□□ -0.35
ABCA4P78363 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC12.89□□□□□ -0.35
ABCA4P78363 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC12.89□□□□□ -0.35
ABCA4P78363 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC12.89□□□□□ -0.35
ABCA4P78363 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC12.89□□□□□ -0.35
ABCA4P78363 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
ABCA4P78363 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
ABCA4P78363 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 AC020910.5-201ENST00000623668 1865 ntBASIC12.89□□□□□ -0.35
ABCA4P78363 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC12.89□□□□□ -0.35
ABCA4P78363 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC12.89□□□□□ -0.35
ABCA4P78363 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC12.89□□□□□ -0.35
ABCA4P78363 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC12.89□□□□□ -0.35
ABCA4P78363 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
ABCA4P78363 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC12.88□□□□□ -0.35
ABCA4P78363 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 PTPA-218ENST00000435132 618 ntTSL 2 BASIC12.88□□□□□ -0.35
ABCA4P78363 VDAC1P1-201ENST00000439229 848 ntBASIC12.88□□□□□ -0.35
ABCA4P78363 AC006453.1-201ENST00000636037 1257 ntBASIC12.88□□□□□ -0.35
ABCA4P78363 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
ABCA4P78363 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
ABCA4P78363 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC12.88□□□□□ -0.35
ABCA4P78363 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC12.88□□□□□ -0.35
ABCA4P78363 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC12.88□□□□□ -0.35
ABCA4P78363 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 AC136759.1-202ENST00000530858 2194 ntBASIC12.88□□□□□ -0.35
ABCA4P78363 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC12.88□□□□□ -0.35
ABCA4P78363 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
ABCA4P78363 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
ABCA4P78363 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC12.88□□□□□ -0.35
ABCA4P78363 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC12.88□□□□□ -0.35
ABCA4P78363 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC12.88□□□□□ -0.35
ABCA4P78363 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC12.88□□□□□ -0.35
ABCA4P78363 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC12.88□□□□□ -0.35
ABCA4P78363 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC12.88□□□□□ -0.35
ABCA4P78363 NPM1P43-201ENST00000558669 786 ntBASIC12.88□□□□□ -0.35
ABCA4P78363 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
ABCA4P78363 AL805961.1-201ENST00000642026 753 ntBASIC12.88□□□□□ -0.35
ABCA4P78363 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 AC055811.4-201ENST00000624039 1754 ntBASIC12.88□□□□□ -0.35
ABCA4P78363 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
ABCA4P78363 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
ABCA4P78363 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC12.88□□□□□ -0.35
ABCA4P78363 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
ABCA4P78363 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
ABCA4P78363 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA4P78363 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 AC013726.1-201ENST00000563747 2285 ntBASIC12.87□□□□□ -0.35
ABCA4P78363 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC12.87□□□□□ -0.35
ABCA4P78363 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC12.87□□□□□ -0.35
ABCA4P78363 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC12.87□□□□□ -0.35
ABCA4P78363 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 AC006335.1-201ENST00000445200 547 ntBASIC12.87□□□□□ -0.35
ABCA4P78363 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
ABCA4P78363 KRT18P66-201ENST00000452970 1269 ntBASIC12.87□□□□□ -0.35
ABCA4P78363 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC12.87□□□□□ -0.35
ABCA4P78363 AC106794.1-201ENST00000506935 792 ntBASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms