Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CDH4P55283 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH4P55283 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH4P55283 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CDH4P55283 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.27■□□□□ 0.04
CDH4P55283 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CDH4P55283 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.27■□□□□ 0.04
CDH4P55283 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC15.27■□□□□ 0.04
CDH4P55283 ACTBP11-201ENST00000436287 1126 ntBASIC15.27■□□□□ 0.04
CDH4P55283 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC15.27■□□□□ 0.04
CDH4P55283 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC15.27■□□□□ 0.04
CDH4P55283 RPSAP36-202ENST00000494591 1261 ntBASIC15.27■□□□□ 0.04
CDH4P55283 AC100850.1-201ENST00000506768 649 ntBASIC15.27■□□□□ 0.04
CDH4P55283 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.27■□□□□ 0.04
CDH4P55283 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
CDH4P55283 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15.27■□□□□ 0.04
CDH4P55283 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.27■□□□□ 0.04
CDH4P55283 KLK3-211ENST00000597483 810 ntTSL 2 BASIC15.27■□□□□ 0.04
CDH4P55283 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CDH4P55283 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH4P55283 AL136301.1-201ENST00000615830 422 ntBASIC15.27■□□□□ 0.04
CDH4P55283 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDH4P55283 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDH4P55283 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.27■□□□□ 0.03
CDH4P55283 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.27■□□□□ 0.03
CDH4P55283 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDH4P55283 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
CDH4P55283 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDH4P55283 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.27■□□□□ 0.03
CDH4P55283 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDH4P55283 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.27■□□□□ 0.03
CDH4P55283 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
CDH4P55283 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.27■□□□□ 0.03
CDH4P55283 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.27■□□□□ 0.03
CDH4P55283 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
CDH4P55283 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDH4P55283 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
CDH4P55283 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
CDH4P55283 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDH4P55283 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.26■□□□□ 0.03
CDH4P55283 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CDH4P55283 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.26■□□□□ 0.03
CDH4P55283 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.26■□□□□ 0.03
CDH4P55283 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CDH4P55283 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CDH4P55283 MRPL37P1-201ENST00000592451 1337 ntBASIC15.26■□□□□ 0.03
CDH4P55283 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.26■□□□□ 0.03
CDH4P55283 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CDH4P55283 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CDH4P55283 AC010141.1-201ENST00000411585 623 ntBASIC15.26■□□□□ 0.03
CDH4P55283 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CDH4P55283 HSPB1P2-201ENST00000448722 546 ntBASIC15.26■□□□□ 0.03
CDH4P55283 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC15.26■□□□□ 0.03
CDH4P55283 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CDH4P55283 AC092658.1-201ENST00000505836 891 ntBASIC15.26■□□□□ 0.03
CDH4P55283 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC15.26■□□□□ 0.03
CDH4P55283 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.26■□□□□ 0.03
CDH4P55283 RNF41-210ENST00000552244 716 ntTSL 3 BASIC15.26■□□□□ 0.03
CDH4P55283 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.26■□□□□ 0.03
CDH4P55283 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC15.26■□□□□ 0.03
CDH4P55283 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.26■□□□□ 0.03
CDH4P55283 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC15.26■□□□□ 0.03
CDH4P55283 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC15.26■□□□□ 0.03
CDH4P55283 AC091271.1-201ENST00000611877 1162 ntBASIC15.26■□□□□ 0.03
CDH4P55283 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15.26■□□□□ 0.03
CDH4P55283 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.26■□□□□ 0.03
CDH4P55283 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.26■□□□□ 0.03
CDH4P55283 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CDH4P55283 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.26■□□□□ 0.03
CDH4P55283 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
CDH4P55283 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH4P55283 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CDH4P55283 AC018529.2-202ENST00000611482 3087 ntBASIC15.25■□□□□ 0.03
CDH4P55283 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH4P55283 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH4P55283 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH4P55283 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH4P55283 AL136172.1-201ENST00000598590 1394 ntBASIC15.25■□□□□ 0.03
CDH4P55283 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH4P55283 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CDH4P55283 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH4P55283 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDH4P55283 AC092135.3-201ENST00000624151 1846 ntBASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms