Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN4P29074 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.15■□□□□ 0.02
PTPN4P29074 RN7SL752P-201ENST00000463779 287 ntBASIC15.15■□□□□ 0.02
PTPN4P29074 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN4P29074 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN4P29074 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
PTPN4P29074 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 CHCHD2P3-201ENST00000603038 451 ntBASIC15.15■□□□□ 0.02
PTPN4P29074 AC008494.3-201ENST00000606615 944 ntBASIC15.15■□□□□ 0.02
PTPN4P29074 AC004790.1-201ENST00000612686 536 ntBASIC15.15■□□□□ 0.02
PTPN4P29074 AC004461.2-201ENST00000629517 803 ntBASIC15.15■□□□□ 0.02
PTPN4P29074 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
PTPN4P29074 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC15.15■□□□□ 0.02
PTPN4P29074 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN4P29074 COL6A4P2-202ENST00000504443 2753 ntBASIC15.15■□□□□ 0.02
PTPN4P29074 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC15.15■□□□□ 0.02
PTPN4P29074 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PTPN4P29074 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
PTPN4P29074 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PTPN4P29074 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC15.15■□□□□ 0.02
PTPN4P29074 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.14■□□□□ 0.01
PTPN4P29074 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC15.14■□□□□ 0.01
PTPN4P29074 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN4P29074 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PTPN4P29074 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN4P29074 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.14■□□□□ 0.01
PTPN4P29074 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PTPN4P29074 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.14■□□□□ 0.01
PTPN4P29074 AC011495.1-201ENST00000498085 584 ntBASIC15.14■□□□□ 0.01
PTPN4P29074 TPRX2P-201ENST00000535362 881 ntBASIC15.14■□□□□ 0.01
PTPN4P29074 NOP2-220ENST00000545915 630 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN4P29074 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.14■□□□□ 0.01
PTPN4P29074 AL109936.8-201ENST00000641772 604 ntBASIC15.14■□□□□ 0.01
PTPN4P29074 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN4P29074 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PTPN4P29074 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PTPN4P29074 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PTPN4P29074 SRC-202ENST00000373558 4304 ntTSL 5 BASIC15.14■□□□□ 0.01
PTPN4P29074 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN4P29074 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PTPN4P29074 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.14■□□□□ 0.01
PTPN4P29074 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PTPN4P29074 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN4P29074 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC15.13■□□□□ 0.01
PTPN4P29074 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.13■□□□□ 0.01
PTPN4P29074 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.13■□□□□ 0.01
PTPN4P29074 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.13■□□□□ 0.01
PTPN4P29074 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
PTPN4P29074 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.13■□□□□ 0.01
PTPN4P29074 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.13■□□□□ 0.01
PTPN4P29074 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.13■□□□□ 0.01
PTPN4P29074 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.13■□□□□ 0.01
PTPN4P29074 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.13■□□□□ 0.01
PTPN4P29074 GIMAP3P-201ENST00000495150 836 ntBASIC15.13■□□□□ 0.01
PTPN4P29074 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.13■□□□□ 0.01
PTPN4P29074 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms