Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC15.77■□□□□ 0.11
BDNFP23560 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.77■□□□□ 0.11
BDNFP23560 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.77■□□□□ 0.11
BDNFP23560 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.11
BDNFP23560 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.77■□□□□ 0.11
BDNFP23560 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.77■□□□□ 0.11
BDNFP23560 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
BDNFP23560 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.76■□□□□ 0.11
BDNFP23560 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.76■□□□□ 0.11
BDNFP23560 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.76■□□□□ 0.11
BDNFP23560 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
BDNFP23560 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 KRTAP10-13P-201ENST00000412914 571 ntBASIC15.76■□□□□ 0.11
BDNFP23560 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC15.76■□□□□ 0.11
BDNFP23560 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC15.76■□□□□ 0.11
BDNFP23560 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC15.76■□□□□ 0.11
BDNFP23560 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.76■□□□□ 0.11
BDNFP23560 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.76■□□□□ 0.11
BDNFP23560 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
BDNFP23560 AL022328.3-201ENST00000607943 679 ntBASIC15.76■□□□□ 0.11
BDNFP23560 AL008638.5-201ENST00000623814 1298 ntBASIC15.76■□□□□ 0.11
BDNFP23560 AC018735.1-201ENST00000437208 1502 ntBASIC15.76■□□□□ 0.11
BDNFP23560 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.76■□□□□ 0.11
BDNFP23560 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
BDNFP23560 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.11
BDNFP23560 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.76■□□□□ 0.11
BDNFP23560 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
BDNFP23560 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.76■□□□□ 0.11
BDNFP23560 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
BDNFP23560 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.76■□□□□ 0.11
BDNFP23560 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.75■□□□□ 0.11
BDNFP23560 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
BDNFP23560 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
BDNFP23560 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.75■□□□□ 0.11
BDNFP23560 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 HNRNPA1P63-201ENST00000427917 963 ntBASIC15.75■□□□□ 0.11
BDNFP23560 AC006033.1-201ENST00000440505 426 ntBASIC15.75■□□□□ 0.11
BDNFP23560 AC099548.2-209ENST00000480264 625 ntBASIC15.75■□□□□ 0.11
BDNFP23560 ZNF767P-206ENST00000513792 565 ntBASIC15.75■□□□□ 0.11
BDNFP23560 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 CD74-212ENST00000524315 584 ntTSL 5 BASIC15.75■□□□□ 0.11
BDNFP23560 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.75■□□□□ 0.11
BDNFP23560 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC15.75■□□□□ 0.11
BDNFP23560 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC15.75■□□□□ 0.11
BDNFP23560 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC15.75■□□□□ 0.11
BDNFP23560 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.75■□□□□ 0.11
BDNFP23560 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
BDNFP23560 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.75■□□□□ 0.11
BDNFP23560 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
BDNFP23560 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.75■□□□□ 0.11
BDNFP23560 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.75■□□□□ 0.11
BDNFP23560 AJ011931.1-201ENST00000618749 2492 ntBASIC15.75■□□□□ 0.11
BDNFP23560 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms