Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC233724.13-201ENST00000598383 410 ntBASIC17.66■□□□□ 0.42
HMGB1P09429 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGB1P09429 AL022328.1-201ENST00000610050 478 ntBASIC17.66■□□□□ 0.42
HMGB1P09429 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGB1P09429 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGB1P09429 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGB1P09429 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB1P09429 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGB1P09429 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGB1P09429 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGB1P09429 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGB1P09429 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
HMGB1P09429 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
HMGB1P09429 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HMGB1P09429 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
HMGB1P09429 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
HMGB1P09429 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGB1P09429 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
HMGB1P09429 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC17.65■□□□□ 0.42
HMGB1P09429 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
HMGB1P09429 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGB1P09429 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC17.65■□□□□ 0.42
HMGB1P09429 C2orf27AP3-201ENST00000434123 579 ntBASIC17.65■□□□□ 0.42
HMGB1P09429 TTTY23B-201ENST00000442790 549 ntBASIC17.65■□□□□ 0.42
HMGB1P09429 USP32P1-208ENST00000506594 1164 ntBASIC17.65■□□□□ 0.42
HMGB1P09429 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.65■□□□□ 0.42
HMGB1P09429 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGB1P09429 AL354718.3-201ENST00000616414 581 ntBASIC17.65■□□□□ 0.42
HMGB1P09429 ETV2-208ENST00000621247 941 ntTSL 5 BASIC17.65■□□□□ 0.42
HMGB1P09429 CR382287.1-201ENST00000623954 586 ntBASIC17.65■□□□□ 0.42
HMGB1P09429 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
HMGB1P09429 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGB1P09429 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
HMGB1P09429 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGB1P09429 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
HMGB1P09429 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 AL136172.1-201ENST00000598590 1394 ntBASIC17.65■□□□□ 0.42
HMGB1P09429 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB1P09429 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGB1P09429 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
HMGB1P09429 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.42
HMGB1P09429 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC17.64■□□□□ 0.42
HMGB1P09429 AP000593.2-201ENST00000542775 1433 ntBASIC17.64■□□□□ 0.42
HMGB1P09429 AC026748.1-201ENST00000624349 3251 ntBASIC17.64■□□□□ 0.42
HMGB1P09429 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
HMGB1P09429 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 AC011840.2-201ENST00000563063 1520 ntBASIC17.64■□□□□ 0.41
HMGB1P09429 AC097359.2-201ENST00000604992 2389 ntBASIC17.64■□□□□ 0.41
HMGB1P09429 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGB1P09429 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGB1P09429 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC17.64■□□□□ 0.41
HMGB1P09429 ALG3P1-201ENST00000508806 1114 ntBASIC17.64■□□□□ 0.41
HMGB1P09429 RNA5SP486-201ENST00000515961 83 ntBASIC17.64■□□□□ 0.41
HMGB1P09429 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGB1P09429 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC17.64■□□□□ 0.41
HMGB1P09429 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC17.64■□□□□ 0.41
HMGB1P09429 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.64■□□□□ 0.41
HMGB1P09429 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
HMGB1P09429 BTNL10-201ENST00000595971 695 ntBASIC17.64■□□□□ 0.41
HMGB1P09429 AC008735.3-201ENST00000596646 500 ntBASIC17.64■□□□□ 0.41
HMGB1P09429 BX088702.1-201ENST00000610784 235 ntBASIC17.64■□□□□ 0.41
HMGB1P09429 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC17.64■□□□□ 0.41
HMGB1P09429 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGB1P09429 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC17.64■□□□□ 0.41
HMGB1P09429 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGB1P09429 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
HMGB1P09429 FKBP4P6-201ENST00000457486 1332 ntBASIC17.64■□□□□ 0.41
HMGB1P09429 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
HMGB1P09429 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB1P09429 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms