Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RB1P06400 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
RB1P06400 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RB1P06400 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RB1P06400 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RB1P06400 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RB1P06400 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RB1P06400 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
RB1P06400 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RB1P06400 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 AC018629.1-201ENST00000623381 1736 ntBASIC15.68■□□□□ 0.1
RB1P06400 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.68■□□□□ 0.1
RB1P06400 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.68■□□□□ 0.1
RB1P06400 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
RB1P06400 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC15.68■□□□□ 0.1
RB1P06400 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.68■□□□□ 0.1
RB1P06400 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC15.68■□□□□ 0.1
RB1P06400 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC15.68■□□□□ 0.1
RB1P06400 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.68■□□□□ 0.1
RB1P06400 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC15.68■□□□□ 0.1
RB1P06400 NUDT4P2-201ENST00000578341 546 ntBASIC15.68■□□□□ 0.1
RB1P06400 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC15.68■□□□□ 0.1
RB1P06400 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
RB1P06400 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.68■□□□□ 0.1
RB1P06400 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.68■□□□□ 0.1
RB1P06400 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
RB1P06400 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.68■□□□□ 0.1
RB1P06400 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
RB1P06400 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RB1P06400 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
RB1P06400 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RB1P06400 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RB1P06400 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
RB1P06400 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RB1P06400 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
RB1P06400 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
RB1P06400 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RB1P06400 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
RB1P06400 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
RB1P06400 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.67■□□□□ 0.1
RB1P06400 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.67■□□□□ 0.1
RB1P06400 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RB1P06400 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RB1P06400 MIR1227-201ENST00000408484 88 ntBASIC15.67■□□□□ 0.1
RB1P06400 KRT18P36-201ENST00000411618 1276 ntBASIC15.67■□□□□ 0.1
RB1P06400 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.67■□□□□ 0.1
RB1P06400 RHEB-207ENST00000496004 744 ntTSL 2 BASIC15.67■□□□□ 0.1
RB1P06400 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC15.67■□□□□ 0.1
RB1P06400 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC15.67■□□□□ 0.1
RB1P06400 AC025262.2-201ENST00000623975 1056 ntBASIC15.67■□□□□ 0.1
RB1P06400 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
RB1P06400 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.67■□□□□ 0.1
RB1P06400 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RB1P06400 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.67■□□□□ 0.1
RB1P06400 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.67■□□□□ 0.1
RB1P06400 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.67■□□□□ 0.1
RB1P06400 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.67■□□□□ 0.1
RB1P06400 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RB1P06400 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
RB1P06400 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
RB1P06400 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RB1P06400 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
RB1P06400 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RB1P06400 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
RB1P06400 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
RB1P06400 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RB1P06400 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.66■□□□□ 0.1
RB1P06400 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.66■□□□□ 0.1
RB1P06400 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.66■□□□□ 0.1
RB1P06400 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.66■□□□□ 0.1
RB1P06400 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RB1P06400 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
RB1P06400 AL359258.3-201ENST00000622910 2331 ntBASIC15.66■□□□□ 0.1
RB1P06400 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RB1P06400 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RB1P06400 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RB1P06400 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RB1P06400 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.66■□□□□ 0.1
RB1P06400 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms