Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RHOQP1-201ENST00000555758 579 ntBASIC12.09□□□□□ -0.47
HOXA3O43365 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC12.09□□□□□ -0.47
HOXA3O43365 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXA3O43365 NDUFV2P1-201ENST00000596415 907 ntBASIC12.09□□□□□ -0.47
HOXA3O43365 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC12.09□□□□□ -0.47
HOXA3O43365 AC138649.2-201ENST00000615886 705 ntBASIC12.09□□□□□ -0.47
HOXA3O43365 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC12.09□□□□□ -0.47
HOXA3O43365 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC12.09□□□□□ -0.47
HOXA3O43365 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA3O43365 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC12.09□□□□□ -0.47
HOXA3O43365 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HOXA3O43365 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA3O43365 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA3O43365 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA3O43365 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA3O43365 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXA3O43365 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXA3O43365 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA3O43365 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA3O43365 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA3O43365 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
HOXA3O43365 SLC9A7P1-201ENST00000554295 3311 ntBASIC12.09□□□□□ -0.47
HOXA3O43365 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC12.09□□□□□ -0.47
HOXA3O43365 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA3O43365 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXA3O43365 FKBP4P6-201ENST00000457486 1332 ntBASIC12.09□□□□□ -0.47
HOXA3O43365 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA3O43365 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA3O43365 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA3O43365 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA3O43365 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.47
HOXA3O43365 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXA3O43365 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXA3O43365 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA3O43365 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXA3O43365 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXA3O43365 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC12.08□□□□□ -0.48
HOXA3O43365 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXA3O43365 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA3O43365 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
HOXA3O43365 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 AL662890.1-201ENST00000396818 632 ntBASIC12.08□□□□□ -0.48
HOXA3O43365 AC104457.1-201ENST00000401024 814 ntBASIC12.08□□□□□ -0.48
HOXA3O43365 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 AL136309.1-201ENST00000403917 691 ntBASIC12.08□□□□□ -0.48
HOXA3O43365 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA3O43365 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA3O43365 CHMP1AP1-201ENST00000445563 662 ntBASIC12.08□□□□□ -0.48
HOXA3O43365 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA3O43365 SERPINA13P-202ENST00000478994 924 ntBASIC12.08□□□□□ -0.48
HOXA3O43365 AC026434.2-201ENST00000506094 1078 ntBASIC12.08□□□□□ -0.48
HOXA3O43365 AC100850.1-201ENST00000506768 649 ntBASIC12.08□□□□□ -0.48
HOXA3O43365 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA3O43365 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXA3O43365 AC005730.2-201ENST00000564549 1184 ntBASIC12.08□□□□□ -0.48
HOXA3O43365 DUX4L47-201ENST00000566374 394 ntBASIC12.08□□□□□ -0.48
HOXA3O43365 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA3O43365 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC12.08□□□□□ -0.48
HOXA3O43365 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC12.08□□□□□ -0.48
HOXA3O43365 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXA3O43365 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 AC126177.1-201ENST00000547829 2218 ntBASIC12.08□□□□□ -0.48
HOXA3O43365 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
HOXA3O43365 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
HOXA3O43365 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
HOXA3O43365 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 AL360270.3-201ENST00000609118 1348 ntBASIC12.08□□□□□ -0.48
HOXA3O43365 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA3O43365 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXA3O43365 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA3O43365 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA3O43365 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA3O43365 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC12.08□□□□□ -0.48
HOXA3O43365 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA3O43365 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HOXA3O43365 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms