Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 AGER-214ENST00000538695 487 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 ACKR1-201ENST00000368121 1240 ntBASIC14.32□□□□□ -0.12
CCDC88CQ9P219 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 RN7SL713P-201ENST00000582127 302 ntBASIC14.32□□□□□ -0.12
CCDC88CQ9P219 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 MIR6787-201ENST00000616675 61 ntBASIC14.32□□□□□ -0.12
CCDC88CQ9P219 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC88CQ9P219 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 MIR6869-201ENST00000619434 62 ntBASIC14.31□□□□□ -0.12
CCDC88CQ9P219 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 AC005089.1-201ENST00000619486 2241 ntBASIC14.31□□□□□ -0.12
CCDC88CQ9P219 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 BTBD6P1-201ENST00000412176 1267 ntBASIC14.31□□□□□ -0.12
CCDC88CQ9P219 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC88CQ9P219 AC006453.4-201ENST00000636949 1252 ntBASIC14.31□□□□□ -0.12
CCDC88CQ9P219 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC88CQ9P219 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC88CQ9P219 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC88CQ9P219 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC88CQ9P219 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC88CQ9P219 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms