Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 FAM58BP-201ENST00000439056 645 ntBASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 AL645933.1-201ENST00000440087 609 ntBASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 Z97180.1-201ENST00000445173 988 ntBASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 AC012618.1-201ENST00000461223 412 ntBASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 RERG-205ENST00000537647 935 ntTSL 2 BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 AC009779.1-201ENST00000551138 283 ntBASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 AC079328.1-201ENST00000560358 952 ntBASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PAAF1Q9BRP4 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 MSRA-203ENST00000441698 788 ntTSL 2 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 NUP210P1-202ENST00000504322 710 ntBASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 FGFR3P5-201ENST00000564496 886 ntBASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 AC016629.1-201ENST00000596579 586 ntBASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 AL132994.2-201ENST00000603120 687 ntBASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 AC015967.2-201ENST00000624092 234 ntBASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 AC006435.4-201ENST00000625037 234 ntBASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 AC100757.4-201ENST00000626934 759 ntBASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 AL356737.1-201ENST00000634391 234 ntBASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 AP002414.2-201ENST00000591780 3365 ntBASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PAAF1Q9BRP4 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 CYP4F23P-201ENST00000593402 1579 ntBASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 AL157791.1-201ENST00000553667 1699 ntBASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 AL008707.1-201ENST00000422498 534 ntBASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 AL133466.1-201ENST00000447582 150 ntBASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC15.84■□□□□ 0.13
PAAF1Q9BRP4 RN7SL769P-201ENST00000469386 295 ntBASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms