Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC126755.4-201ENST00000549796 1459 ntBASIC13.18□□□□□ -0.3
NKX3-1Q99801 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 AC007787.1-201ENST00000588095 1583 ntBASIC13.18□□□□□ -0.3
NKX3-1Q99801 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 LILRP1-201ENST00000444199 1370 ntBASIC13.18□□□□□ -0.3
NKX3-1Q99801 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 TUBB3P1-201ENST00000405796 1332 ntBASIC13.17□□□□□ -0.3
NKX3-1Q99801 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 AL133267.1-201ENST00000398220 340 ntBASIC13.17□□□□□ -0.3
NKX3-1Q99801 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 AC093214.1-201ENST00000511688 1107 ntBASIC13.17□□□□□ -0.3
NKX3-1Q99801 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 AL138828.2-201ENST00000615812 383 ntBASIC13.17□□□□□ -0.3
NKX3-1Q99801 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 AC089987.1-201ENST00000551654 2209 ntBASIC13.17□□□□□ -0.3
NKX3-1Q99801 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms