Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB4Q8WW32 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB4Q8WW32 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC15□□□□□ -0.01
HMGB4Q8WW32 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15□□□□□ -0.01
HMGB4Q8WW32 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
HMGB4Q8WW32 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15□□□□□ -0.01
HMGB4Q8WW32 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15□□□□□ -0.01
HMGB4Q8WW32 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15□□□□□ -0.01
HMGB4Q8WW32 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15□□□□□ -0.01
HMGB4Q8WW32 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
HMGB4Q8WW32 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15□□□□□ -0.01
HMGB4Q8WW32 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC15□□□□□ -0.01
HMGB4Q8WW32 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 RN7SKP230-201ENST00000365642 335 ntBASIC15□□□□□ -0.01
HMGB4Q8WW32 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
HMGB4Q8WW32 ISCA2P1-201ENST00000425548 448 ntBASIC15□□□□□ -0.01
HMGB4Q8WW32 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC15□□□□□ -0.01
HMGB4Q8WW32 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC15□□□□□ -0.01
HMGB4Q8WW32 IGLV3-15-201ENST00000518356 244 ntBASIC15□□□□□ -0.01
HMGB4Q8WW32 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 AC132192.2-201ENST00000596206 1147 ntBASIC15□□□□□ -0.01
HMGB4Q8WW32 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15□□□□□ -0.01
HMGB4Q8WW32 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC15□□□□□ -0.01
HMGB4Q8WW32 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15□□□□□ -0.01
HMGB4Q8WW32 AL353770.1-201ENST00000614915 403 ntBASIC15□□□□□ -0.01
HMGB4Q8WW32 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC15□□□□□ -0.01
HMGB4Q8WW32 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15□□□□□ -0.01
HMGB4Q8WW32 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15□□□□□ -0.01
HMGB4Q8WW32 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15□□□□□ -0.01
HMGB4Q8WW32 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15□□□□□ -0.01
HMGB4Q8WW32 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15□□□□□ -0.01
HMGB4Q8WW32 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 AC244394.1-201ENST00000435000 1665 ntBASIC15□□□□□ -0.01
HMGB4Q8WW32 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
HMGB4Q8WW32 AC006058.4-201ENST00000624016 1670 ntBASIC15□□□□□ -0.01
HMGB4Q8WW32 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15□□□□□ -0.01
HMGB4Q8WW32 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB4Q8WW32 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 AL008718.2-201ENST00000609206 1313 ntBASIC14.99□□□□□ -0.01
HMGB4Q8WW32 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 AC012441.2-201ENST00000444843 739 ntBASIC14.99□□□□□ -0.01
HMGB4Q8WW32 KLF2P1-201ENST00000447438 1042 ntBASIC14.99□□□□□ -0.01
HMGB4Q8WW32 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 RTN3P1-201ENST00000536295 711 ntBASIC14.99□□□□□ -0.01
HMGB4Q8WW32 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 NAT9-224ENST00000583757 583 ntTSL 3 BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 AL132994.2-201ENST00000603120 687 ntBASIC14.99□□□□□ -0.01
HMGB4Q8WW32 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 MIR7845-201ENST00000618396 99 ntBASIC14.99□□□□□ -0.01
HMGB4Q8WW32 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 MBLAC2-202ENST00000514906 1936 ntBASIC14.99□□□□□ -0.01
HMGB4Q8WW32 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms