Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 AL391825.1-201ENST00000457671 1364 ntBASIC17.11■□□□□ 0.33
ATL3Q6DD88 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
ATL3Q6DD88 LRRC59-203ENST00000576448 1531 ntBASIC17.11■□□□□ 0.33
ATL3Q6DD88 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATL3Q6DD88 AC126755.1-201ENST00000525846 6405 ntBASIC17.11■□□□□ 0.33
ATL3Q6DD88 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
ATL3Q6DD88 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
ATL3Q6DD88 MIR600HG-201ENST00000449175 5984 ntBASIC17.1■□□□□ 0.33
ATL3Q6DD88 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
ATL3Q6DD88 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC17.1■□□□□ 0.33
ATL3Q6DD88 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 GNAQP1-201ENST00000444815 1067 ntBASIC17.1■□□□□ 0.33
ATL3Q6DD88 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.1■□□□□ 0.33
ATL3Q6DD88 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.1■□□□□ 0.33
ATL3Q6DD88 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 AC138761.1-201ENST00000584393 385 ntBASIC17.1■□□□□ 0.33
ATL3Q6DD88 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.1■□□□□ 0.33
ATL3Q6DD88 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC17.1■□□□□ 0.33
ATL3Q6DD88 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.1■□□□□ 0.33
ATL3Q6DD88 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 AL136172.1-201ENST00000598590 1394 ntBASIC17.1■□□□□ 0.33
ATL3Q6DD88 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATL3Q6DD88 AC005840.4-201ENST00000541242 2494 ntBASIC17.1■□□□□ 0.33
ATL3Q6DD88 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC17.1■□□□□ 0.33
ATL3Q6DD88 KRT8P24-201ENST00000560290 1559 ntBASIC17.1■□□□□ 0.33
ATL3Q6DD88 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.1■□□□□ 0.33
ATL3Q6DD88 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
ATL3Q6DD88 AC215219.1-201ENST00000400706 1817 ntBASIC17.1■□□□□ 0.33
ATL3Q6DD88 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC17.09■□□□□ 0.33
ATL3Q6DD88 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
ATL3Q6DD88 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
ATL3Q6DD88 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.09■□□□□ 0.33
ATL3Q6DD88 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.09■□□□□ 0.33
ATL3Q6DD88 DFFBP1-201ENST00000433250 979 ntBASIC17.09■□□□□ 0.33
ATL3Q6DD88 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.09■□□□□ 0.33
ATL3Q6DD88 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.09■□□□□ 0.33
ATL3Q6DD88 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.09■□□□□ 0.33
ATL3Q6DD88 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.09■□□□□ 0.33
ATL3Q6DD88 AC133539.2-201ENST00000604757 467 ntBASIC17.09■□□□□ 0.33
ATL3Q6DD88 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC17.09■□□□□ 0.33
ATL3Q6DD88 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
ATL3Q6DD88 POLL-206ENST00000370172 2308 ntTSL 2 BASIC17.09■□□□□ 0.33
ATL3Q6DD88 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
ATL3Q6DD88 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
ATL3Q6DD88 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ATL3Q6DD88 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
ATL3Q6DD88 AC097376.2-205ENST00000610159 5334 ntBASIC17.08■□□□□ 0.33
ATL3Q6DD88 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ATL3Q6DD88 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC17.08■□□□□ 0.33
ATL3Q6DD88 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ATL3Q6DD88 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
ATL3Q6DD88 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
ATL3Q6DD88 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
ATL3Q6DD88 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC17.08■□□□□ 0.33
ATL3Q6DD88 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ATL3Q6DD88 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 142.2 ms