Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC10.4□□□□□ -0.74
PRKDCP78527 TYMSP2-201ENST00000589501 424 ntBASIC10.4□□□□□ -0.74
PRKDCP78527 AC126755.5-201ENST00000622756 267 ntBASIC10.4□□□□□ -0.74
PRKDCP78527 AC093495.1-215ENST00000626655 821 ntTSL 5 BASIC10.4□□□□□ -0.74
PRKDCP78527 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
PRKDCP78527 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
PRKDCP78527 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC10.4□□□□□ -0.74
PRKDCP78527 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.74
PRKDCP78527 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
PRKDCP78527 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.74
PRKDCP78527 WDR54-202ENST00000409791 854 ntTSL 3 BASIC10.4□□□□□ -0.74
PRKDCP78527 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
PRKDCP78527 CAP2-207ENST00000493172 861 ntTSL 2 BASIC10.4□□□□□ -0.74
PRKDCP78527 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC10.4□□□□□ -0.74
PRKDCP78527 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC10.4□□□□□ -0.74
PRKDCP78527 AC048382.6-201ENST00000621980 1223 ntBASIC10.4□□□□□ -0.74
PRKDCP78527 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC10.4□□□□□ -0.74
PRKDCP78527 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
PRKDCP78527 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
PRKDCP78527 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
PRKDCP78527 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC10.4□□□□□ -0.74
PRKDCP78527 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
PRKDCP78527 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
PRKDCP78527 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC10.4□□□□□ -0.74
PRKDCP78527 PCDHGB8P-201ENST00000502926 1973 ntBASIC10.4□□□□□ -0.74
PRKDCP78527 HNRNPA3P6-201ENST00000472163 1006 ntBASIC10.4□□□□□ -0.74
PRKDCP78527 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC10.4□□□□□ -0.74
PRKDCP78527 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC10.4□□□□□ -0.74
PRKDCP78527 AL590556.2-202ENST00000636906 844 ntBASIC10.4□□□□□ -0.74
PRKDCP78527 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
PRKDCP78527 ODCP-201ENST00000459650 1639 ntBASIC10.4□□□□□ -0.75
PRKDCP78527 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
PRKDCP78527 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC10.4□□□□□ -0.75
PRKDCP78527 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC10.4□□□□□ -0.75
PRKDCP78527 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.75
PRKDCP78527 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.75
PRKDCP78527 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.75
PRKDCP78527 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
PRKDCP78527 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
PRKDCP78527 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC10.39□□□□□ -0.75
PRKDCP78527 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC10.39□□□□□ -0.75
PRKDCP78527 ALMS1P1-201ENST00000428767 921 ntBASIC10.39□□□□□ -0.75
PRKDCP78527 RNU1-80P-201ENST00000459500 161 ntBASIC10.39□□□□□ -0.75
PRKDCP78527 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC10.39□□□□□ -0.75
PRKDCP78527 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC10.39□□□□□ -0.75
PRKDCP78527 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC10.39□□□□□ -0.75
PRKDCP78527 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC10.39□□□□□ -0.75
PRKDCP78527 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
PRKDCP78527 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
PRKDCP78527 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC10.39□□□□□ -0.75
PRKDCP78527 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC10.39□□□□□ -0.75
PRKDCP78527 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
PRKDCP78527 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC10.39□□□□□ -0.75
PRKDCP78527 TEKT4P2-202ENST00000559466 1312 ntBASIC10.39□□□□□ -0.75
PRKDCP78527 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
PRKDCP78527 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
PRKDCP78527 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC10.39□□□□□ -0.75
PRKDCP78527 RPL18AP16-201ENST00000424057 531 ntBASIC10.39□□□□□ -0.75
PRKDCP78527 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC10.39□□□□□ -0.75
PRKDCP78527 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC10.39□□□□□ -0.75
PRKDCP78527 KRT127P-201ENST00000547183 433 ntBASIC10.39□□□□□ -0.75
PRKDCP78527 RN7SL524P-201ENST00000581152 300 ntBASIC10.39□□□□□ -0.75
PRKDCP78527 AC134878.2-201ENST00000620700 1265 ntBASIC10.39□□□□□ -0.75
PRKDCP78527 AL807742.1-201ENST00000636678 1160 ntTSL 5 BASIC10.39□□□□□ -0.75
PRKDCP78527 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC10.39□□□□□ -0.75
PRKDCP78527 AC010491.1-201ENST00000563101 2797 ntBASIC10.39□□□□□ -0.75
PRKDCP78527 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC10.39□□□□□ -0.75
PRKDCP78527 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
PRKDCP78527 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC10.39□□□□□ -0.75
PRKDCP78527 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
PRKDCP78527 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
PRKDCP78527 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
PRKDCP78527 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
PRKDCP78527 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC10.39□□□□□ -0.75
PRKDCP78527 RPSAP12-201ENST00000435879 888 ntBASIC10.39□□□□□ -0.75
PRKDCP78527 AL450346.2-201ENST00000495602 1024 ntBASIC10.39□□□□□ -0.75
PRKDCP78527 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC10.39□□□□□ -0.75
PRKDCP78527 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC10.39□□□□□ -0.75
PRKDCP78527 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC10.39□□□□□ -0.75
PRKDCP78527 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC10.39□□□□□ -0.75
PRKDCP78527 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
PRKDCP78527 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC10.39□□□□□ -0.75
PRKDCP78527 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC10.39□□□□□ -0.75
PRKDCP78527 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
PRKDCP78527 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
PRKDCP78527 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
PRKDCP78527 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC10.39□□□□□ -0.75
PRKDCP78527 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC10.39□□□□□ -0.75
PRKDCP78527 AC090616.6-203ENST00000579186 1945 ntBASIC10.39□□□□□ -0.75
PRKDCP78527 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC10.39□□□□□ -0.75
PRKDCP78527 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC10.39□□□□□ -0.75
PRKDCP78527 VPS18-202ENST00000558474 873 ntTSL 3 BASIC10.39□□□□□ -0.75
PRKDCP78527 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC10.39□□□□□ -0.75
PRKDCP78527 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC10.39□□□□□ -0.75
PRKDCP78527 LUC7L3-223ENST00000625349 408 ntTSL 2 BASIC10.39□□□□□ -0.75
PRKDCP78527 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC10.38□□□□□ -0.75
PRKDCP78527 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC10.38□□□□□ -0.75
PRKDCP78527 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC10.38□□□□□ -0.75
PRKDCP78527 PRDX2-202ENST00000334482 784 ntTSL 3 BASIC10.38□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms