Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
CDH12P55289 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.05□□□□□ -0.16
CDH12P55289 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.05□□□□□ -0.16
CDH12P55289 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
CDH12P55289 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
CDH12P55289 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.05□□□□□ -0.16
CDH12P55289 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.05□□□□□ -0.16
CDH12P55289 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.05□□□□□ -0.16
CDH12P55289 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.05□□□□□ -0.16
CDH12P55289 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.05□□□□□ -0.16
CDH12P55289 TSSK5P-201ENST00000423978 907 ntBASIC14.05□□□□□ -0.16
CDH12P55289 AC241585.1-201ENST00000433527 519 ntBASIC14.05□□□□□ -0.16
CDH12P55289 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.05□□□□□ -0.16
CDH12P55289 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.05□□□□□ -0.16
CDH12P55289 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CDH12P55289 AC092337.1-201ENST00000568699 1129 ntBASIC14.05□□□□□ -0.16
CDH12P55289 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.05□□□□□ -0.16
CDH12P55289 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
CDH12P55289 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.05□□□□□ -0.16
CDH12P55289 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC14.05□□□□□ -0.16
CDH12P55289 KRT18P28-201ENST00000453838 1332 ntBASIC14.05□□□□□ -0.16
CDH12P55289 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.05□□□□□ -0.16
CDH12P55289 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CDH12P55289 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CDH12P55289 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
CDH12P55289 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CDH12P55289 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.05□□□□□ -0.16
CDH12P55289 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CDH12P55289 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH12P55289 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.04□□□□□ -0.16
CDH12P55289 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.04□□□□□ -0.16
CDH12P55289 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.04□□□□□ -0.16
CDH12P55289 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CDH12P55289 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.04□□□□□ -0.16
CDH12P55289 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 AL157414.3-201ENST00000624276 1954 ntBASIC14.04□□□□□ -0.16
CDH12P55289 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.04□□□□□ -0.16
CDH12P55289 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CDH12P55289 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.04□□□□□ -0.16
CDH12P55289 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CDH12P55289 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
CDH12P55289 METTL21AP1-201ENST00000438852 635 ntBASIC14.04□□□□□ -0.16
CDH12P55289 AC009477.1-201ENST00000452936 217 ntBASIC14.04□□□□□ -0.16
CDH12P55289 TPT1P11-201ENST00000458482 498 ntBASIC14.04□□□□□ -0.16
CDH12P55289 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CDH12P55289 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.04□□□□□ -0.16
CDH12P55289 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.04□□□□□ -0.16
CDH12P55289 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CDH12P55289 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.04□□□□□ -0.16
CDH12P55289 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.04□□□□□ -0.16
CDH12P55289 AC009407.1-201ENST00000568958 598 ntBASIC14.04□□□□□ -0.16
CDH12P55289 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.04□□□□□ -0.16
CDH12P55289 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.04□□□□□ -0.16
CDH12P55289 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.04□□□□□ -0.16
CDH12P55289 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.04□□□□□ -0.16
CDH12P55289 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CDH12P55289 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
CDH12P55289 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.04□□□□□ -0.16
CDH12P55289 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms